Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,819,824 – 18,819,914 |
Length | 90 |
Max. P | 0.794040 |
Location | 18,819,824 – 18,819,914 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -22.55 |
Energy contribution | -23.33 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.32 |
Structure conservation index | 0.84 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18819824 90 - 23771897 UUUUCAAUAUAUGUAUGUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCGGUGGUGGUGGCGGUGGUGGUAUCUGCAACUU ...............(((((.(((.(((((((..((((..((((..((((...))))..)))))))))))))))...))).))))).... ( -29.10) >DroSec_CAF1 27356 80 - 1 UUUUGAAUAUAU----GUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCGGUG---GU---GGUGGUGGUAUCUACAACUU ...........(----((((....((((((((..((((..((((..((((...))))..)))---))---)))))))))))))))).... ( -24.30) >DroSim_CAF1 27993 83 - 1 UUUUGAAUAUAU----GUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCAGUGGUGGU---GGUGGUGGUAUCUGCAACUU ...........(----((((....((((((((..((((..((((....((((.....)))).)))))---)))))))))))))))).... ( -27.60) >consensus UUUUGAAUAUAU____GUAGCUACAUGCCGCUUGACCAUUCCACAAGAGCUGAGUUUCGGUGGUGGU___GGUGGUGGUAUCUGCAACUU ................((((.(((.(((((((..((((..((((..((((...))))..))))))))...)))))))))).))))..... (-22.55 = -23.33 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:27 2006