| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,818,646 – 18,818,738 |
| Length | 92 |
| Max. P | 0.545109 |
| Location | 18,818,646 – 18,818,738 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 88.47 |
| Mean single sequence MFE | -15.63 |
| Consensus MFE | -15.50 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18818646 92 + 23771897 AUGAUUCAAAUCAGCUAAAUUUAUGCUAUGCAAUAUUGGUGAAUAUUUUUGGUAAGCUUUUUUGGACACACACACAACACAAAUUUGGCAAA-------- .((((....))))(((((((((.(((((...((((((....))))))..)))))........((......))........)))))))))...-------- ( -13.80) >DroSec_CAF1 26145 95 + 1 AUGAUUCAAAUCAGCUAAAUUUAUGCUAUGCAAUAUUGGUGAAUAUUUUUGGUAAGCUUUUCUGGAAACACACA-----CAAAUUUGGCAAACCCCAAAA .((((....))))(((((((((.(((((...((((((....))))))..)))))........((....))....-----.)))))))))........... ( -16.50) >DroSim_CAF1 26764 94 + 1 AUGAUUAAAAUCAGCUAAAUUUAUGCUAUGCAAUAUUGGUGAAUAUUUUUGGUAAGCUUUU-UGGAAACACACA-----CAAAUUUGGCAAACCCCGAAA .((((....))))(((((((((.(((((...((((((....))))))..))))).......-((....))....-----.)))))))))........... ( -16.60) >consensus AUGAUUCAAAUCAGCUAAAUUUAUGCUAUGCAAUAUUGGUGAAUAUUUUUGGUAAGCUUUU_UGGAAACACACA_____CAAAUUUGGCAAACCCC_AAA .((((....))))(((((((((.(((((...((((((....))))))..)))))........((....))..........)))))))))........... (-15.50 = -15.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:26 2006