| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,815,820 – 18,815,944 |
| Length | 124 |
| Max. P | 0.861138 |
| Location | 18,815,820 – 18,815,921 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 97.33 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18815820 101 + 23771897 UCGCUAACCCUCCCCUCGUUUGCAAUUAAAAAAGCAAAAAAUAAGCAAAAAAAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAA ..................((((((.........((.........))..............(((..(((((.(((....)))))))).)))....)))))). ( -19.00) >DroSec_CAF1 23297 98 + 1 UCGCUAACCCUCCCCUCGUUUGCAAUUAAAAAAGCAAAAAAAAAGCAA---AAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAA ..................((((((.........((.........))..---.........(((..(((((.(((....)))))))).)))....)))))). ( -19.00) >DroSim_CAF1 23576 98 + 1 UCGCUAACCCUCCCCUCGUUUGCAAUUAAAAAAGCAAAAAAAAAGCAA---AAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAA ..................((((((.........((.........))..---.........(((..(((((.(((....)))))))).)))....)))))). ( -19.00) >consensus UCGCUAACCCUCCCCUCGUUUGCAAUUAAAAAAGCAAAAAAAAAGCAA___AAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAA ..................((((((.........((.........))..............(((..(((((.(((....)))))))).)))....)))))). (-19.00 = -19.00 + 0.00)
| Location | 18,815,846 – 18,815,944 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 83.94 |
| Mean single sequence MFE | -17.38 |
| Consensus MFE | -12.43 |
| Energy contribution | -13.30 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.555258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18815846 98 + 23771897 UAAAAAAGCAAAAAAUAAGCAAAAAAAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAAAGGCUAGAUGAGGAGCGUGAUUG ..................((...................(((((.(((....)))))))).(((((((.((......))))).))))..))....... ( -19.30) >DroSec_CAF1 23323 95 + 1 UAAAAAAGCAAAAAAAAAGCAA---AAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAAAGGCUAGAUGAGGAGCGUGAUUG ..................((..---..............(((((.(((....)))))))).(((((((.((......))))).))))..))....... ( -19.30) >DroSim_CAF1 23602 95 + 1 UAAAAAAGCAAAAAAAAAGCAA---AAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAAAGGCUAGAUGAGGAGCGUGAUUG ..................((..---..............(((((.(((....)))))))).(((((((.((......))))).))))..))....... ( -19.30) >DroAna_CAF1 16037 76 + 1 UAAAAA------AAAAAAGCGA---GAA-------A------AAAACUAUUCGGGUUCGAGUUCACUGUCCAAAAAGGCUAGAUGAGGAGCGUGAUUG ......------..........---...-------.------........(((.((((...(((((((.((.....)).))).)))))))).)))... ( -11.60) >consensus UAAAAAAGCAAAAAAAAAGCAA___AAAUCUAUAGAAAACCGAGACCUAUUUGGGCUCGGGUUCACUGUGCAAAAAGGCUAGAUGAGGAGCGUGAUUG ..................((...................(((((.(((....)))))))).(((((((.((......))))).))))..))....... (-12.43 = -13.30 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:22 2006