| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,814,932 – 18,815,023 |
| Length | 91 |
| Max. P | 0.984410 |
| Location | 18,814,932 – 18,815,023 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 79.17 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -12.70 |
| Energy contribution | -13.45 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18814932 91 + 23771897 UAAAUUUCAUUAUUUUGAUUUCAACGAGAUCAGACUUCUUCUGCCGCGUCAUCGUCGUCAUUAUGAUCAUGAUAAUGAUCAUGAUGAGCAA .............(((((((((...))))))))).......(((((((....)).))(((((((((((((....)))))))))))))))). ( -26.30) >DroSec_CAF1 22434 85 + 1 UAAAUUUCAUUAUUUUGAUUUCAACGAGAUCAGUCUUCUUCUGCCGCGUCAUCGUCGUCAUUAUGAUCAU------GAUCAUGAUGAGCAA ..............((((((((...))))))))........(((((((....)).))((((((((((...------.))))))))))))). ( -19.30) >DroSim_CAF1 22723 85 + 1 UAAAUUUCAUUAUUUUGAUUUCAACGAGAUCAGUCUUCUUGUGCCGCGUCAUCGUCGUCAUUAUGAUCAU------GAUCAUGAUGAGCAA ......(((......))).....((((((.......))))))...((.(((((((.(((((.......))------))).))))))))).. ( -19.60) >DroAna_CAF1 14938 74 + 1 UACAUUUCAUUAUUUUGAUUCCGGCGAGAUGAAUCUACUU--GCC-A------GUCAUCAUCCUGAUCAU------CAUCGUCGUCGUC-- ................(((..(((((((((((.((....(--(..-.------.....))....))))))------).))))))..)))-- ( -15.50) >consensus UAAAUUUCAUUAUUUUGAUUUCAACGAGAUCAGUCUUCUUCUGCCGCGUCAUCGUCGUCAUUAUGAUCAU______GAUCAUGAUGAGCAA ..............((((((((...))))))))........................(((((((((((........))))))))))).... (-12.70 = -13.45 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:20 2006