Locus 6966

Sequence ID	3L_DroMel_CAF1
Location	18,810,621 – 18,810,774
Length	153
Max. P	0.856660

overview

Window 5

Location	18,810,621 – 18,810,737
Length	116
Sequences	3
Columns	116
Reading direction	reverse
Mean pairwise identity	96.83
Mean single sequence MFE	-24.10
Consensus MFE	-23.01
Energy contribution	-22.57
Covariance contribution	-0.44
Combinations/Pair	1.04
Mean z-score	-1.85
Structure conservation index	0.95
SVM decision value	0.56
SVM RNA-class probability	0.782341
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18810621 116 - 23771897
CUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCUCCCCAUAUGUAUUAUAUGUAUUAUAUGUAUGCAUUAUCUCUCUCGUGUGU
......((((....((((....))))....))))(((((((....)))))))......(((((.........((((((.((((((...))))))))))))..........))))). ( -25.31)
>DroSec_CAF1 14418 115 - 1
CUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCCCCCCAUACAU-UUGUAUGUAUUAUAUGUAUGCAUUAUCUCUCUCGUGUGU
......((((....((((....))))....))))(((((((....)))))))......(((((......(((((..-..)))))......(((....)))..........))))). ( -23.40)
>DroSim_CAF1 14690 115 - 1
CUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCCCCCCAUACUU-UUGUAUGUAUUAUAUGUAUGCAUUAUCUCUCUCGUGUGU
......((((....((((....))))....))))(((((((....)))))))......(((((......(((((..-..)))))......(((....)))..........))))). ( -23.60)
>consensus
CUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCCCCCCAUACAU_UUGUAUGUAUUAUAUGUAUGCAUUAUCUCUCUCGUGUGU
......((((....((((....))))....))))(((((((....)))))))......(((((......(((((.....)))))......(((....)))..........))))). (-23.01 = -22.57 +  -0.44)

alignment

secondary structure

dotplot

Window 6

Location	18,810,660 – 18,810,774
Length	114
Sequences	3
Columns	114
Reading direction	reverse
Mean pairwise identity	96.77
Mean single sequence MFE	-22.00
Consensus MFE	-19.66
Energy contribution	-19.66
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-2.41
Structure conservation index	0.89
SVM decision value	0.81
SVM RNA-class probability	0.856660
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18810660 114 - 23771897
UCUGCUGGUAUGAUAUCUCCAUUUCCCCAUCUGUUAUCUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCUCCCCAUAUGUA
...((.(((..((....))(((((((....(((((.((.....))))))).((((....))))........)))))))..)))))...........((((.........)))). ( -21.20)
>DroSec_CAF1 14457 113 - 1
UCUGCUGGUAUGAUAUCUCCAUUUCCCCAUCUGUUAUCUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCCCCCCAUACAU-
.......(((((..................(((((.((.....))))))).((((....))))........(((((((....))))))).................)))))..- ( -21.70)
>DroSim_CAF1 14729 113 - 1
UCUGCUGCUAUGAUAUCUCCAUUUCCCCAUCUGUUAUCUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCCCCCCAUACUU-
...(((((((((.......))).......((.(((....))).))))))))((((....))))........(((((((....)))))))........................- ( -23.10)
>consensus
UCUGCUGGUAUGAUAUCUCCAUUUCCCCAUCUGUUAUCUAACUGAAGCAGCGCACUUUUGUGCAAAUCUUCGGAAGUGACACCGCUUUCUUCCCCCACAUUCCCCCCAUACAU_
.(((((.....((((.(...............).)))).......))))).((((....))))........(((((((....)))))))......................... (-19.66 = -19.66 +   0.00)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:17 2006