Locus 6965

Sequence ID 3L_DroMel_CAF1
Location 18,810,014 – 18,810,110
Length 96
Max. P 0.944478
window11294

overview

Window 4

Location 18,810,014 – 18,810,110
Length 96
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 96.53
Mean single sequence MFE -18.87
Consensus MFE -17.87
Energy contribution -17.87
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.43
Structure conservation index 0.95
SVM decision value 1.34
SVM RNA-class probability 0.944478
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18810014 96 + 23771897
CGAUUCUAAAAAUAUACGUAAAGUACUUUGAAUUCUAAUGCAGACAUUCAUCUGCUUUUGGAAUUUGAACUUCAAAUGCAUAGUACUCAAAUGAUC
................(((..((((((.((...(((((.(((((......)))))..)))))(((((.....))))).)).))))))...)))... ( -19.50)
>DroSec_CAF1 13777 96 + 1
CGAUUCUAAAAAUACCCGUAAAGUACUUUGCAUUCUAAUGCAGACAUUCAUCUGCUUUUGGAAUUUGAACUUCAAAUACUUAGUACUCAAAUGAUC
................(((..((((((..(...(((((.(((((......)))))..)))))(((((.....))))).)..))))))...)))... ( -18.00)
>DroSim_CAF1 14059 96 + 1
CGAUUCUAAAAAUACCCGUAAAGUACUUUGAAUUCUAAUGCAGACAUUCAUCUGCUUUUGGAAUUUGAACUUCAAAUACUUAGUACUCAAAUGAUC
................(((..(((((((..((((((((.(((((......)))))..))))))))..).............))))))...)))... ( -19.11)
>consensus
CGAUUCUAAAAAUACCCGUAAAGUACUUUGAAUUCUAAUGCAGACAUUCAUCUGCUUUUGGAAUUUGAACUUCAAAUACUUAGUACUCAAAUGAUC
................(((..((((((..(...(((((.(((((......)))))..)))))(((((.....))))).)..))))))...)))... (-17.87 = -17.87 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:16 2006