Locus 6964

Sequence ID 3L_DroMel_CAF1
Location 18,808,980 – 18,809,088
Length 108
Max. P 0.917725
window11293

overview

Window 3

Location 18,808,980 – 18,809,088
Length 108
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 88.79
Mean single sequence MFE -25.60
Consensus MFE -21.38
Energy contribution -21.17
Covariance contribution -0.21
Combinations/Pair 1.11
Mean z-score -2.74
Structure conservation index 0.84
SVM decision value 1.12
SVM RNA-class probability 0.917725
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18808980 108 + 23771897
GCAAGAAAAUGCU-AUAUGAAUCAUAAAUGUAUCUUAUGUGUGUAGAAACAUAUGUGGAAAGUUUUUUUUUCGCAGCAAGUUGAUCAAGUGAGAUCAUUUUAUUGCAUU
((((.((((((((-......................((((((......))))))((((((((....))))))))))))...(((((......))))))))).))))... ( -23.90)
>DroSec_CAF1 12799 103 + 1
GCAAGAAAAUAUUCACAUGAAUCAUGAAUGUAU---AUGAAUGUAUAUACAUAUGUGGAAAGUUU---UUUCGCAGCGAAUUGAUCAAGUGAGAUCAUUUUAUUGCAUU
((((.(((((.(((((.(((.(((...((((((---(((....))))))))).(((((((.....---)))))))......)))))).)))))...))))).))))... ( -25.70)
>DroSim_CAF1 13071 103 + 1
GCAAGAAAAUGUUCAUAUGAAUCAUACAUGUAU---AUGAAUGUAUAUACAUAUGUGGAAAGUUU---UUUCGCAGCGAAUUGAUCAAGUGAGAUCAUUUUAUUGCAUU
((((.(((((((((((.(((.(((...((((((---(((....))))))))).(((((((.....---)))))))......)))))).)))))..)))))).))))... ( -27.20)
>consensus
GCAAGAAAAUGUUCAUAUGAAUCAUAAAUGUAU___AUGAAUGUAUAUACAUAUGUGGAAAGUUU___UUUCGCAGCGAAUUGAUCAAGUGAGAUCAUUUUAUUGCAUU
((((.(((((((((((.(((.(((....(((.........((((....)))).(((((((........))))))))))...)))))).)))))..)))))).))))... (-21.38 = -21.17 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:15 2006