Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,801,982 – 18,802,078 |
Length | 96 |
Max. P | 0.525939 |
Location | 18,801,982 – 18,802,078 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -13.57 |
Consensus MFE | -12.13 |
Energy contribution | -12.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.89 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.509871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18801982 96 + 23771897 AAGAAAAACCAGUCCAUUAAAAAUAGAAAUCCAGUUGGCAAUUUGGUAGCCAUAAAUAAAUAAACAUAGCUGUAGGCAAAACAAAGUGAACUGCAA .........((((.((((............((((........))))..((((((..((........))..))).))).......)))).))))... ( -12.10) >DroSec_CAF1 6310 96 + 1 AAGAAAAACCAGUCCAUUAAAAAAAGAAAUACAGUUGGCAAUUUGCUAGCCAUAAUUAAAUAAACAUAGCUAUAGGCAAAACAAAGUGAACUGCAA .........((((.((((...............((((((.....))))))..................((.....)).......)))).))))... ( -14.30) >DroSim_CAF1 6298 96 + 1 AAGAAAAACCAGUCCAUUAAAAAAAGAAAUCCAGUUGGCAAUUUGCUAGCCAUAAAUAAAUAAACAUAGCUAUUGGCAAAACAAAGUGAACUGCAA .........((((.((((...............((((((.....))))))..................((.....)).......)))).))))... ( -14.30) >consensus AAGAAAAACCAGUCCAUUAAAAAAAGAAAUCCAGUUGGCAAUUUGCUAGCCAUAAAUAAAUAAACAUAGCUAUAGGCAAAACAAAGUGAACUGCAA .........((((.((((...............((((((.....))))))..................((.....)).......)))).))))... (-12.13 = -12.47 + 0.33)
Location | 18,801,982 – 18,802,078 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.83 |
Mean single sequence MFE | -17.70 |
Consensus MFE | -15.37 |
Energy contribution | -16.37 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.88 |
Structure conservation index | 0.87 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.525939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18801982 96 - 23771897 UUGCAGUUCACUUUGUUUUGCCUACAGCUAUGUUUAUUUAUUUAUGGCUACCAAAUUGCCAACUGGAUUUCUAUUUUUAAUGGACUGGUUUUUCUU ...(((((((...............(((((((..........))))))).(((..........)))..............)))))))......... ( -15.30) >DroSec_CAF1 6310 96 - 1 UUGCAGUUCACUUUGUUUUGCCUAUAGCUAUGUUUAUUUAAUUAUGGCUAGCAAAUUGCCAACUGUAUUUCUUUUUUUAAUGGACUGGUUUUUCUU ...(((((((......(((((...((((((((..........))))))))))))).(((.....))).............)))))))......... ( -18.00) >DroSim_CAF1 6298 96 - 1 UUGCAGUUCACUUUGUUUUGCCAAUAGCUAUGUUUAUUUAUUUAUGGCUAGCAAAUUGCCAACUGGAUUUCUUUUUUUAAUGGACUGGUUUUUCUU ...(((((((......(((((...((((((((..........)))))))))))))...((....))..............)))))))......... ( -19.80) >consensus UUGCAGUUCACUUUGUUUUGCCUAUAGCUAUGUUUAUUUAUUUAUGGCUAGCAAAUUGCCAACUGGAUUUCUUUUUUUAAUGGACUGGUUUUUCUU ...(((((((......(((((...((((((((..........)))))))))))))...((....))..............)))))))......... (-15.37 = -16.37 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:09 2006