Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,798,622 – 18,798,721 |
Length | 99 |
Max. P | 0.954877 |
Location | 18,798,622 – 18,798,721 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.47 |
Mean single sequence MFE | -16.81 |
Consensus MFE | -11.40 |
Energy contribution | -12.90 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.42 |
Structure conservation index | 0.68 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18798622 99 - 23771897 CAAAAUAACAACAGUCGAAAUAAUAACAUCGGCAAA-AAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA-AGGCGGCAACUUGUUAAGU .....((((((..(((((..........)))))...-.............((((......(.(((((.....))))).)..-...))))...))))))... ( -20.00) >DroSec_CAF1 4047 97 - 1 CAAAAUUACAACAGUCGAAAU---AAGAUCGGCAAAAAAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA-AGGCGACAACUUGUUAAGU .......((((..((((....---....(((((.................))))).....(.(((((.....))))).)..-...))))...))))..... ( -17.13) >DroSim_CAF1 4060 99 - 1 CAAAAUAACAACAGUCGAAAUAAUAAGAUCGGCAAA-AAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA-AGGCGGCAACUUGUUAAGU .....((((((..(((((..........)))))...-.............((((......(.(((((.....))))).)..-...))))...))))))... ( -20.00) >DroAna_CAF1 3278 86 - 1 CAA----ACAACAGUCAA-----------CGGCGCUGAAAUAAAUAACAAGCCAAGAUAAGCUCAAUAAAGUGAUACACAAAAGGCGGCAACUUGCUAACU ...----....((((...-----------....)))).............(((..((.....))......(((...)))....)))(((.....))).... ( -10.10) >consensus CAAAAUAACAACAGUCGAAAU___AAGAUCGGCAAA_AAAUAAAUAACAAGCCGAGAUAAGCGAAGUAAAACGCUUCACAA_AGGCGGCAACUUGUUAAGU .............(((((..........)))))...........(((((((((.....(((((........))))).......)))(....)))))))... (-11.40 = -12.90 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:07 2006