Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,794,636 – 18,794,756 |
Length | 120 |
Max. P | 0.555442 |
Location | 18,794,636 – 18,794,756 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -40.59 |
Consensus MFE | -24.81 |
Energy contribution | -24.37 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.23 |
Mean z-score | -1.64 |
Structure conservation index | 0.61 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18794636 120 - 23771897 UCCAUCCUCUGUACCUGAUCCUGCCCGCUGGCUUGGCCUGCAGUAUGGCCUUCCACCUGCCGGUUAGUACUCCGCCCAACGCUUUGGUUGCUGGCUAUGCCAACAUUAGGACGAAGGACA ....((((.(((.((((((..((...((.(((...))).)).((((((((..(.(((.(((((........)))......))...))).)..))))))))))..))))))))).)))).. ( -37.80) >DroVir_CAF1 369 120 - 1 UCCAUCCACUGUACCUGGUCUUCCCAGCAGGUCUCGCCUGCAGCAUGGCCUUCCAUUUGCCGGUGAGCACGCCGCCAAAUGCCCUGGUUGCUGGCUAUGCGCACAUUCGCAGCAAGGACA ....(((.((((...(((.....)))(((((.....))))).((((((((...((((((.(((((....))))).))))))(....).....))))))))........))))...))).. ( -41.60) >DroGri_CAF1 357 120 - 1 UAAAUCCGCUGUACUUAGUUUUUCCUGCAGGUCUGGCCUGCAGUAUGGCCUUCCACUUGCCAGUGAGCACGCCGCCAAACGCUUUGGUCGCUGGAUAUGCCCACAUUCGCAGCAAGGACA ....((((((((............(((((((.....)))))))...(((..((((..(((......))).((.(((((.....))))).))))))...))).......)))))..))).. ( -38.90) >DroWil_CAF1 203 120 - 1 UUCAUCCGUUGUAUUUGAUAUUACCCGCUGGCCUGGCCUGCAGUAUGGCCUUCCAUCUGCCUGUGAGCACACCGCCCAAUGCUUUGGUUGCUGGCUAUGCCAAUAUUAGAACAAAGGAUA ...((((.((((.((((((((.......((((.(((((.((((.((((....)))))))).....((((.(((((.....))...)))))))))))).)))))))))))))))).)))). ( -39.31) >DroMoj_CAF1 369 120 - 1 UACAUCCUCUGUACCUGGUGCUUCCAGCAGGCCUCGCUUGCAGCAUGGCCUUCCAUUUGCCGGUGAGCACGCCACCAAAUGCUUUGGUUGCUGGCUAUGCGCAUAUUCGCAGCAAGGAUA ...(((((((((.....((((..(((((((((((((((.((((.((((....)))))))).))))))...)))(((((.....)))))))))))....))))......))))..))))). ( -46.90) >DroAna_CAF1 144 120 - 1 UUCAUCCACUUUACCUGAUCCUGCCCGCCGGUUUGGCCUGCAGCAUGGCCUUCCACCUGCCGGUGAGCACUCCGCCGAACGCUCUGGUCGCCGGAUAUGCCAACAUCAGGACGAAGGACA ........((((.((((((..(((.(((((((..((((........))))........))))))).))).((((.(((.(......)))).)))).........))))))..)))).... ( -39.00) >consensus UACAUCCACUGUACCUGAUCCUGCCCGCAGGCCUGGCCUGCAGCAUGGCCUUCCACCUGCCGGUGAGCACGCCGCCAAACGCUUUGGUUGCUGGCUAUGCCAACAUUAGCACCAAGGACA ....(((...................((.(((...))).)).((((((((..(.(((.((.((((.......))))....))...))).)..))))))))...............))).. (-24.81 = -24.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:05 2006