| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,788,823 – 18,788,926 |
| Length | 103 |
| Max. P | 0.956900 |
| Location | 18,788,823 – 18,788,926 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.80 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -7.20 |
| Energy contribution | -6.96 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.41 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18788823 103 + 23771897 --UUUCCUAAAUUCGUGGCAUUCCACAAUUGCAACAUUUUAUACACUGCAAUCAUUUUUGAAAUCAAAUAUGCUGUUACAUUUUAUAAA--AAGGAAUGAAAUAUAA-- --.(((((......((((....))))..........(((((((....(((..(((.((((....)))).))).))).......))))))--))))))..........-- ( -15.30) >DroSec_CAF1 68647 87 + 1 --UUUCUUGAAUUCGUGGCAUUCCACAAUUGCAACAUUUCAUACAUUGCAAACAUUUUUGAAAUAAAAUGUGCUGUUAC--------------------AUAUAAUAAA --............((((((........((((((...........))))))(((((((......)))))))..))))))--------------------.......... ( -13.40) >DroSim_CAF1 74931 103 + 1 --UUUCUUGAAUUCGUGGCAUUCCACAAUUGCAACAUUUCAUACGUUGCAAACAUUUUUGAAAUAAAAUAAAUUUUAAAAG--UAUCGA--AAGGAAUGAAAUAAUAAA --............((..((((((....(((((((.........)))))))..(((((((((((.......))))))))))--).....--..))))))..))...... ( -21.60) >DroEre_CAF1 77184 101 + 1 AAUUCGUUAUACUCGUGGCAUUCCGCAAUUGCAACAUUUCAUACAAUGCAAACAUUUUUAAAAACAAUUUUG---UAGAGG--UAUCAAUUGCGGAAUGAAAUAAU--- ..............((..(((((((((((((....(((((.(((((.......................)))---))))))--)..)))))))))))))..))...--- ( -24.60) >DroYak_CAF1 73818 95 + 1 AGUUUCUUUAAUUCGUGGCAUUCCGCAAUUGCAACAUUUUAUACAAUGCAAACCUUUUCUUCUACAAUUUUG---U--------AUCAAUAAAUUAAUGAAAUAAU--- .(((((.((((((.((((....))))..(((((.............)))))...........((((....))---)--------)......)))))).)))))...--- ( -12.22) >consensus __UUUCUUAAAUUCGUGGCAUUCCACAAUUGCAACAUUUCAUACAAUGCAAACAUUUUUGAAAUCAAAUAUG_U_UAAA____UAUCAA__AAGGAAUGAAAUAAUA__ ..............((((....))))..(((((.............))))).......................................................... ( -7.20 = -6.96 + -0.24)
| Location | 18,788,823 – 18,788,926 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 69.80 |
| Mean single sequence MFE | -19.39 |
| Consensus MFE | -10.42 |
| Energy contribution | -10.98 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18788823 103 - 23771897 --UUAUAUUUCAUUCCUU--UUUAUAAAAUGUAACAGCAUAUUUGAUUUCAAAAAUGAUUGCAGUGUAUAAAAUGUUGCAAUUGUGGAAUGCCACGAAUUUAGGAAA-- --..........((((((--((((((...(((((...(((.((((....)))).))).)))))...)))))))........((((((....))))))....))))).-- ( -22.70) >DroSec_CAF1 68647 87 - 1 UUUAUUAUAU--------------------GUAACAGCACAUUUUAUUUCAAAAAUGUUUGCAAUGUAUGAAAUGUUGCAAUUGUGGAAUGCCACGAAUUCAAGAAA-- .........(--------------------((((((...(((..((((.((((....)))).)))).)))...))))))).((((((....))))))..........-- ( -17.40) >DroSim_CAF1 74931 103 - 1 UUUAUUAUUUCAUUCCUU--UCGAUA--CUUUUAAAAUUUAUUUUAUUUCAAAAAUGUUUGCAACGUAUGAAAUGUUGCAAUUGUGGAAUGCCACGAAUUCAAGAAA-- ..........((((((..--.((((.--...........((((((......))))))..((((((((.....)))))))))))).))))))................-- ( -17.80) >DroEre_CAF1 77184 101 - 1 ---AUUAUUUCAUUCCGCAAUUGAUA--CCUCUA---CAAAAUUGUUUUUAAAAAUGUUUGCAUUGUAUGAAAUGUUGCAAUUGCGGAAUGCCACGAGUAUAACGAAUU ---..((((((((((((((((((..(--(.((((---(((...(((..............)))))))).))...))..)))))))))))))....)))))......... ( -22.14) >DroYak_CAF1 73818 95 - 1 ---AUUAUUUCAUUAAUUUAUUGAU--------A---CAAAAUUGUAGAAGAAAAGGUUUGCAUUGUAUAAAAUGUUGCAAUUGCGGAAUGCCACGAAUUAAAGAAACU ---....((((.(((((((.((..(--------(---((....))))..))....(((((((((((((........))))).)))))...)))..))))))).)))).. ( -16.90) >consensus __UAUUAUUUCAUUCCUU__UUGAUA____GUAA_A_CAAAUUUGAUUUCAAAAAUGUUUGCAAUGUAUGAAAUGUUGCAAUUGUGGAAUGCCACGAAUUCAAGAAA__ ..........................................................(((((((((.....)))))))))((((((....))))))............ (-10.42 = -10.98 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:04 2006