Locus 6956

Sequence ID 3L_DroMel_CAF1
Location 18,780,488 – 18,780,584
Length 96
Max. P 0.762499
window11280

overview

Window 0

Location 18,780,488 – 18,780,584
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 88.75
Mean single sequence MFE -17.30
Consensus MFE -12.48
Energy contribution -13.16
Covariance contribution 0.68
Combinations/Pair 1.10
Mean z-score -2.09
Structure conservation index 0.72
SVM decision value 0.51
SVM RNA-class probability 0.762499
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18780488 96 + 23771897
AACAUACAAAUGCAAAAAUAUAUUUCUGAGUCAUCAAUACUAAGGUCGCUGCUAUAAUUAGCAUAUAUCUUAAAUGAACAAAGCAUAUUGCAUUGA
........(((((((...........(((....)))....((((((...(((((....)))))...))))))...............))))))).. ( -16.00)
>DroSec_CAF1 60274 96 + 1
AACAUACAAAUGCAAAAAUAUAUUUCUGAGUCAUCAAUGCUAAGGUCGCUGCUAUAAUUAGCAUAUAUCUUAAAUGAACAAAGCAUAUUGCAUUCA
........(((((((...........(((....)))((((((((((...(((((....)))))...)))))..........))))).))))))).. ( -17.00)
>DroSim_CAF1 66489 96 + 1
AACAUACAAGUGCAAAAAUAUAUUUCUGAGUCAUCAAUGCUAAGGUCUCUGCUAUAAUUAGCAUAUAUCUUAAAUGAACAAAGCAUAUUGCAUUAA
........(((((((...........(((....)))((((((((((.(.(((((....))))).).)))))..........))))).))))))).. ( -17.60)
>DroEre_CAF1 68945 96 + 1
AACAUGCAAAUGCAAAAAUACACUUUCAAGUCAUCAAUGUUAAGGUUGCAGUUAUAAUUAGCAUUUAGCUUAAAUUAACAAAGCAUAUUGCAUUGA
...((((((((((................((.(((........))).)).((((.....(((.....))).....))))...)))).))))))... ( -17.20)
>DroYak_CAF1 65421 95 + 1
AACAUACGAAUGCAA-AGCACACUUUUGAGUCAUCAAUGUUAAGGUUACUGCUAUAAUUAGCAUUUUUCUUAAAUUAACAAAGCAUAUUGCAUUGA
........(((((((-.((......((((....))))..((((((..(.(((((....))))).)..)))))).........))...))))))).. ( -18.70)
>consensus
AACAUACAAAUGCAAAAAUAUAUUUCUGAGUCAUCAAUGCUAAGGUCGCUGCUAUAAUUAGCAUAUAUCUUAAAUGAACAAAGCAUAUUGCAUUGA
........(((((((...........(((....)))....((((((...(((((....)))))...))))))...............))))))).. (-12.48 = -13.16 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:02 2006