| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,779,240 – 18,779,331 |
| Length | 91 |
| Max. P | 0.946401 |
| Location | 18,779,240 – 18,779,331 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 86.16 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -21.97 |
| Energy contribution | -22.63 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18779240 91 - 23771897 ACUCACUAAUUUAUCUGUGCGUUUUGUUGGCCCCCAAAGGCGUACAACAACAACAAC--------AAUAGCUGCCAGCAUGGUGAGGAGAAAAUAUCUC .(((((((......(((.((((((((((((((......)))((......))..))))--------)).))).)))))..)))))))((((.....)))) ( -24.90) >DroSec_CAF1 59047 94 - 1 ACUCACUAAUUUAUCUGUGCGUUUUGUUGGCCCCCAAAGGCGUACAACAACAACAACAAC-----AGCAGCUGUCAGCAUGGUGAGGAGAAAAUAUCUC .(((((((.........(((...(((((((((......)))((......))..)))))).-----.)))((.....)).)))))))((((.....)))) ( -25.50) >DroEre_CAF1 67640 89 - 1 ACUCACUAAUUUAUCUGUGCGU--UGUUGGCCCCCAAAGGCGUACAACAACA--------ACAACAAUAGCAGCCAGCAUGGUGAGGAGAAAAUAUCUG .(((((((......((((..((--((((((((......)))((......)).--------.))))))).))))......)))))))............. ( -25.00) >consensus ACUCACUAAUUUAUCUGUGCGUUUUGUUGGCCCCCAAAGGCGUACAACAACAACAAC________AAUAGCUGCCAGCAUGGUGAGGAGAAAAUAUCUC .(((((((.......((((((((...((((...)))).)))))))).......................((.....)).)))))))((((.....)))) (-21.97 = -22.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:01 2006