| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,773,009 – 18,773,113 |
| Length | 104 |
| Max. P | 0.838103 |
| Location | 18,773,009 – 18,773,113 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 91.63 |
| Mean single sequence MFE | -45.64 |
| Consensus MFE | -39.58 |
| Energy contribution | -40.02 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18773009 104 + 23771897 GCUGUUGGCGGGUGGUGGAACCGGUUGGCUACUAUGCGGUGGAAUGCCGGGAUUCAAACCCGUACCAGGACCAAAGAUCGUUCCUGGAGCUUCGGCCAGUGGUG ((..(((((((((..((((.(((((...(((((....)))))...)))))..)))).))))((.((((((.(.......).)))))).))....)))))..)). ( -47.60) >DroSec_CAF1 52739 104 + 1 GCUGUUGGCGGGUGGUGGAGCCUGUUGGCUACUAUGCGGAGGAAUGCCGGGACUCAAACCCGUUCCAGGACCAAAGAUCGUUCCCGGGGCUUCGGCCAGCGGAG .((((((((((((....((((((.((.((......)).))((....))))).)))..))))(((((.(((.(.......).))).)))))....)))))))).. ( -41.30) >DroSim_CAF1 58781 104 + 1 GCUGUUGGCGGGUGGUGGAGCCGGUUGGCUACUAUGCGGAGGAAUGCCGGGAUUCAAACCCGUUCCAGGACCAAAGAUCGUUCCCGGGGCUUCGGCCAGCGGAG .((((((((((((..((((.(((((...((.((....)).))...)))))..)))).))))(((((.(((.(.......).))).)))))....)))))))).. ( -43.50) >DroEre_CAF1 61225 104 + 1 GCUGUUGGCGGGCGGUGGAGCCGGUUGGCUGCUAUGCGGAGGAAUGCCGGGAUUCAAGCCCGUUCCAGGACCAAAGAUCGUUCCUGGUGCUUCCGCCAGCGGAG .((((((((((((..((((.(((((...((((...))))......)))))..)))).))))((.((((((.(.......).)))))).))....)))))))).. ( -48.70) >DroYak_CAF1 57007 104 + 1 ACUGUUGGCGGGUGGUGGAGCCGGUUGGCUACUAUGCGGAGGCAUGCCGGGAUUCAAGCCCGGUCCAGGACCAAAAAUCGAUCCUGGCGCUUCGGCCUGCGGUG (((((.((((.(((((..((((....))))))))).).(((((..((((((.......))))))((((((.(.......).)))))).))))).))).))))). ( -47.10) >consensus GCUGUUGGCGGGUGGUGGAGCCGGUUGGCUACUAUGCGGAGGAAUGCCGGGAUUCAAACCCGUUCCAGGACCAAAGAUCGUUCCUGGGGCUUCGGCCAGCGGAG .((((((((((((..((((.(((((...((.((....)).))...)))))..)))).))))(..((((((.(.......).))))))..)....)))))))).. (-39.58 = -40.02 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:01 2006