Locus 6952

Sequence ID 3L_DroMel_CAF1
Location 18,763,202 – 18,763,295
Length 93
Max. P 0.780710
window11276

overview

Window 6

Location 18,763,202 – 18,763,295
Length 93
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.47
Mean single sequence MFE -25.22
Consensus MFE -13.25
Energy contribution -12.14
Covariance contribution -1.11
Combinations/Pair 1.30
Mean z-score -2.45
Structure conservation index 0.53
SVM decision value 0.56
SVM RNA-class probability 0.780710
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18763202 93 - 23771897
CGAAUAUCAUCAAUUGAAACCACUUGAAGUCAAUUCGUCGA------CUUCCGUUUCCACCAGCAACUUCCUGUCCUCCACAACGGCCCAAUUGUUGGA
...............(((((.....((((((........))------)))).)))))..(((((((....((((........)))).....))))))). ( -18.90)
>DroPse_CAF1 84724 99 - 1
AGAGUACCAUCAGCUGAAGCCCCUGGCAGCGAGUGCCACCAAUUCGGGGUCCGUUUCCACCACCAAUUUCCUGUCCUCGAACACCGCUCAGCUGCUGGA
......(((.(((((((.(((...))).(((.(((.......(((((((.(.(.................).).)))))))))))))))))))).))). ( -31.54)
>DroSec_CAF1 42967 93 - 1
CGAAUAUCAUCAAUUGAAACCACUUGAAGUCAAUUCGUCGA------CUUCCGUUUCCACCAGCAACUUCCUGGCCUCCACAACGGCCCAGUUGUUGGA
...............(((((.....((((((........))------)))).)))))..(((((((((....((((........)))).))))))))). ( -28.30)
>DroSim_CAF1 47301 93 - 1
CGAGUAUCAUCAAUUGAAACCACUUGAAGUCAAUUCGUCGA------CUUCCGUUUCCACCAGCAACUUCCUGUCCUCCACAACGGCCCAAUUGUUGGA
.((......))....(((((.....((((((........))------)))).)))))..(((((((....((((........)))).....))))))). ( -19.00)
>DroYak_CAF1 47107 93 - 1
CGAAUACCAUCAAUUGAAGCCACUUGAAGUCAAUUCCUCGA------CUUCCGUUUCCACCAGCAACUUCCUGUCCUCCACAACGGCCCAAUUGCUGGA
......(((.((((((..(((....((((((........))------)))).(((.......(((......))).......)))))).)))))).))). ( -22.04)
>DroPer_CAF1 87567 99 - 1
AGAGUACCAUCAGCUGAAGCCCCUGGCAGCGAGUGCCACCAAUUCGGGGUCCGUUUCCACCACCAAUUUCCUGUCCUCGAACACCGCUCAGCUGCUGGA
......(((.(((((((.(((...))).(((.(((.......(((((((.(.(.................).).)))))))))))))))))))).))). ( -31.54)
>consensus
CGAAUACCAUCAAUUGAAACCACUUGAAGUCAAUUCCUCGA______CUUCCGUUUCCACCAGCAACUUCCUGUCCUCCACAACGGCCCAAUUGCUGGA
......(((.((((((........((((.....)))).............(((((........((......))........)))))..)))))).))). (-13.25 = -12.14 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:58 2006