| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,750,277 – 18,750,367 |
| Length | 90 |
| Max. P | 0.965489 |
| Location | 18,750,277 – 18,750,367 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.95 |
| Mean single sequence MFE | -14.45 |
| Consensus MFE | -10.27 |
| Energy contribution | -10.30 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.965489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18750277 90 - 23771897 --------------AAAAAAACAC-----ACAACUCAUGUCUGUCUAAUUGGGCAGAUUUUCCUUUUUGCCGCUGUCA---AACAAUUAACAUAAAACAUACAUAUAAAUAA-------- --------------..........-----.......((((.(((.((((((((((((........))))))(....).---..)))))))))....))))............-------- ( -10.90) >DroPse_CAF1 69646 106 - 1 AGAGAACCAGGGGAAAAA-ACCACACAGGCCAACGCGUGUCUGCCUAAUUGGGCAGAUUUUCCUUUUCGUUGUUGUCA---AACAAUUAACAUUAAACACAUUUAUA--UUA-------- ...(((..((((((((..-......((.((....)).))(((((((....))))))))))))))))))((((((....---))))))....................--...-------- ( -24.70) >DroSec_CAF1 29996 86 - 1 --------------AAAA----AC-----ACAACUCAUGUCUGCCUAAUUGGGCAUAUUUUCCUUUUUGCCGCUGUCA---AACAAUUAACAUAAAACGUACAUAUAAAUAA-------- --------------....----..-----.......((((((((((....)))))..........(((((....).))---))...............).))))........-------- ( -6.30) >DroEre_CAF1 37684 86 - 1 --------------AAAA----AC-----ACAACUCAUGUCUGCCUAAUUGGGCAGAUUUUCCUUUUUGCCGCUGUCA---AACAAUUAACAUAAAACAUACAUAUAAAAAA-------- --------------....----..-----.........((((((((....))))))))....................---...............................-------- ( -11.50) >DroAna_CAF1 31354 96 - 1 --------------AAAC----AU-----CCAACUCAUGUCUGCCUAAUUGGGCAGAUUUUCCUUUUUGUCGUUGACUAUUAACAAUUAACAUUAAACAUGUACAAAA-AAAUGCAAAAC --------------....----..-----.........((((((((....)))))))).....(((((((.(((((...))))).....((((.....))))))))))-).......... ( -16.60) >DroPer_CAF1 72370 86 - 1 --------------AAAA-ACCACACAGGCCAACGCGUGUCUGCCUAAUUGGGCAGAUUUUCCUUUUCGUUGUUGUCA---AA------ACAUUAAACACAUUUAUA--UUA-------- --------------....-........((((((((...((((((((....)))))))).........)))))..))).---..------..................--...-------- ( -16.70) >consensus ______________AAAA____AC_____ACAACUCAUGUCUGCCUAAUUGGGCAGAUUUUCCUUUUUGCCGCUGUCA___AACAAUUAACAUAAAACAUACAUAUAA_UAA________ ......................................((((((((....)))))))).............................................................. (-10.27 = -10.30 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:57 2006