Locus 695

Sequence ID 3L_DroMel_CAF1
Location 2,083,031 – 2,083,151
Length 120
Max. P 0.628490
window1062

overview

Window 2

Location 2,083,031 – 2,083,151
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.39
Mean single sequence MFE -47.23
Consensus MFE -33.59
Energy contribution -33.30
Covariance contribution -0.30
Combinations/Pair 1.50
Mean z-score -1.31
Structure conservation index 0.71
SVM decision value 0.19
SVM RNA-class probability 0.628490
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2083031 120 + 23771897
CGCGCCUCGAAGUGAGCCGUCUGAUGUUCAUUGAUUCUGUCGAUGUUCUGAAGAGGUUGGGUGAACACUGGGCGCUGGCGAGUGCCGGGGGUUUCAGGCUCCUGGCGCUGAUGCGGCGCA
.(((((.((..((.(((.((((..((((((((.(..((.(((......)))..))..).))))))))..))))))).)).((((((((((((.....))))))))))))..)).))))). ( -57.70)
>DroVir_CAF1 160773 120 + 1
CGAGCUUCAAAGUGGGCGGUCUGGUGCUCAUUGAUGCGAUCAAUAUUUUGAAGCGGUUGUGUGAAUACUGGACGCUGGCGUGUGCCAGGAGUUUCAACUUCCUGACGCUGAUGCGGUGCC
...((.(((..((.((((.((..(((.((((...(((..((((....)))).))).....)))).)))..)))))).))..(((.(((((((....)).))))).)))))).))...... ( -40.40)
>DroGri_CAF1 135370 120 + 1
CGCGCCUCAAAGUGGGCCGUUUGAUGCUCAUUGAUGCGAUCAAUAUUCUGGAGCGGCUGCGUGAACACGGGACGCUGGAGUGUGCCAGGAGUUUCCACCUCCUGGCGCUGAUGAGGUGCG
(((((((((.(((((((........)))))))...((.....(((((((..((((.(((.(....).)))..)))))))))))((((((((.......))))))))))...))))))))) ( -54.30)
>DroWil_CAF1 179551 120 + 1
CGAGCCUCGAAAUGAGCAGUCUGGUGUUCAUUAAUGCGAUCAAUAUUCUGCAAAGGCUGAGUGAACACUGGACGUUGACGUGUGCCAGGUGUUUCAAUUUCUUGGCGUUGAUGUGGUGCC
...(((.....((.(((.(((..(((((((((...((..................))..)))))))))..)))..........((((((...........))))))))).))..)))... ( -35.07)
>DroMoj_CAF1 139201 120 + 1
CGCGCCUCAAAGUGAGCGGUCUGGUGCUCAUUGAUGCGAUCAAUGUUUUGAAUUGGUUGGGUGAACAUGGGUCGCUGGCGUGUGCCAGGCGUUUCGACCUCCUGGCGCUGGUGUGGUGCC
.(((((.((..((.(((((.((.(((.(((((....((((((((.......))))))))))))).))).))))))).))..((((((((.(.......).))))))))...)).))))). ( -49.70)
>DroAna_CAF1 141513 120 + 1
CGCGCCUCAAAGUGUGCUGUCUGGUGCUCGUUUAUCCUAUCAAUAUUCUGGAGCGGCUGCGUGAACACAGGGCGCUGGCGCGUUCCAGGGGUUUCCGGCUCCUGGCGCUGGUGCGGAGCU
((((((.......(((((....((((((((((..(((............)))..)))((.(....).))))))))))))))((.((((((((.....)))))))).)).))))))..... ( -46.20)
>consensus
CGCGCCUCAAAGUGAGCCGUCUGGUGCUCAUUGAUGCGAUCAAUAUUCUGAAGCGGCUGCGUGAACACUGGACGCUGGCGUGUGCCAGGAGUUUCAACCUCCUGGCGCUGAUGCGGUGCC
.(((((.((..((.(((.((((.(((.((((........(((......))).........)))).))).))))))).))..((((((((((.......))))))))))...)).))))). (-33.59 = -33.30 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:44 2006