Locus 6949

Sequence ID 3L_DroMel_CAF1
Location 18,721,706 – 18,721,803
Length 97
Max. P 0.952335
window11272

overview

Window 2

Location 18,721,706 – 18,721,803
Length 97
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 87.70
Mean single sequence MFE -20.11
Consensus MFE -17.81
Energy contribution -17.42
Covariance contribution -0.39
Combinations/Pair 1.16
Mean z-score -2.18
Structure conservation index 0.89
SVM decision value 1.42
SVM RNA-class probability 0.952335
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18721706 97 - 23771897
AACGAUUUUAUUUCUCUGCACACUUUACGCUCAUUUUUCGUGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUCAUUUAGCGUGUUC-UCACA----CAC
.................((........(((.(((.....)))..)))......((((((((.......)))))))).....))((((..-..)))----).. ( -20.00)
>DroPse_CAF1 49332 83 - 1
--------------UCUGCACGCUUU----UAUUUUUUUUCGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUUAUUUAGUGUGUGC-UCACAAACACAC
--------------...(((.((...----...........))))).......((((((((.......)))))))).....((((((..-......)))))) ( -19.14)
>DroSec_CAF1 10555 97 - 1
AACGAUUUUAUUUCUCUGCACACUUUACGCUCAUUUUUCGUGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUCAUUUAGCGUGUUC-UCACA----CAC
.................((........(((.(((.....)))..)))......((((((((.......)))))))).....))((((..-..)))----).. ( -20.00)
>DroSim_CAF1 14005 97 - 1
AACGAUUUUAUUUCUCUGCACACUUUACGCUCAUUUUUCGUGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUCAUUUAGCGUGUUC-UCACA----CAC
.................((........(((.(((.....)))..)))......((((((((.......)))))))).....))((((..-..)))----).. ( -20.00)
>DroEre_CAF1 17821 97 - 1
AGCGAUUUUAUUUCACUGCACACUUUACGCUCAUUUUUCGUGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUCAUUUAGCGUGUUC-CCACA----CAC
.((..............((((((................))).))).......((((((((.......)))))))).....))((((..-..)))----).. ( -21.29)
>DroYak_CAF1 13647 98 - 1
AACGAUUUUAUUUCUCUGCACACUCUACGCUCAUUUUUCGUGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUCAUUUAGCGUGUUCUCCACA----CAC
.................(.((((.((((((.(((.....)))..)))......((((((((.......))))))))...))).)))).)......----... ( -20.20)
>consensus
AACGAUUUUAUUUCUCUGCACACUUUACGCUCAUUUUUCGUGCUGCGCCAUAAGAAGCGCAUUUUUAUUGCGUUUCAUUUAGCGUGUUC_UCACA____CAC
.................((((((................))).)))((.....((((((((.......)))))))).....))(((.....)))........ (-17.81 = -17.42 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:54 2006