| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,720,423 – 18,720,513 |
| Length | 90 |
| Max. P | 0.992901 |
| Location | 18,720,423 – 18,720,513 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 98.44 |
| Mean single sequence MFE | -31.97 |
| Consensus MFE | -31.28 |
| Energy contribution | -31.68 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.992901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18720423 90 + 23771897 AUCCUAUUCCAGCCUCGUGGCAACUGCUGUUGCCAUUGCCGCCGUUGCGAUGCAGGCCAUCGUUGGAAUUGGUUCCUCCUCCUCCGCCGC ..((.((((((((...((((((((....))))))))....(((((......)).)))....)))))))).)).................. ( -28.30) >DroSec_CAF1 9265 90 + 1 AUCCUAUUCCAGCCUCGUGGCAACUGCUGUUGCCAUUGCCGCCGUUGCGAUGCAGGCCGUCGGUGGAAUUGGUUCCUCCUCCUCCGCCGC ...........(((((((.(((((.((.((.......)).)).))))).))).))))...(((((((...((.....))...))))))). ( -33.80) >DroSim_CAF1 12692 90 + 1 AUCCUAUUCCAGCCUCGUGGCAACUGCUGUUGCCAUUGCCGCCGUUGCGAUGCAGGCCGUCGGUGGAAUUGGUUCCUCCUCCUCCGCCGC ...........(((((((.(((((.((.((.......)).)).))))).))).))))...(((((((...((.....))...))))))). ( -33.80) >DroEre_CAF1 16568 90 + 1 AUCCUAUUCCAGCCUCGUGGCAACUGCUGUUGCCAUUGCCGCCGUUGCGAUGCAGGCCAUCGGUGGAAUUGGUUCCUCCUCCUCCGCCGC ...........(((((((.(((((.((.((.......)).)).))))).))).))))...(((((((...((.....))...))))))). ( -33.80) >DroYak_CAF1 12331 90 + 1 AUCCUAUUCCAGCCUCGUGGCAACUGCUGUUGCCAUUGCCGCCGUUGCGAUGCAGGCCAUCGGUGGAAUUGUUUCCUCCUCCUCCGCCGC ...........(((((((.(((((.((.((.......)).)).))))).))).))))...(((((((...............))))))). ( -30.16) >consensus AUCCUAUUCCAGCCUCGUGGCAACUGCUGUUGCCAUUGCCGCCGUUGCGAUGCAGGCCAUCGGUGGAAUUGGUUCCUCCUCCUCCGCCGC ...........(((((((.(((((.((.((.......)).)).))))).))).))))...(((((((...((.....))...))))))). (-31.28 = -31.68 + 0.40)
| Location | 18,720,423 – 18,720,513 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 98.44 |
| Mean single sequence MFE | -33.74 |
| Consensus MFE | -32.16 |
| Energy contribution | -32.32 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18720423 90 - 23771897 GCGGCGGAGGAGGAGGAACCAAUUCCAACGAUGGCCUGCAUCGCAACGGCGGCAAUGGCAACAGCAGUUGCCACGAGGCUGGAAUAGGAU .((((((((..((.....))..))))..((.((((((((.((((....))))...((....))))))..))))))..))))......... ( -30.50) >DroSec_CAF1 9265 90 - 1 GCGGCGGAGGAGGAGGAACCAAUUCCACCGACGGCCUGCAUCGCAACGGCGGCAAUGGCAACAGCAGUUGCCACGAGGCUGGAAUAGGAU .(((.((((..((.....))..)))).))).((((((((..(((....)))))..(((((((....)))))))..))))))......... ( -35.90) >DroSim_CAF1 12692 90 - 1 GCGGCGGAGGAGGAGGAACCAAUUCCACCGACGGCCUGCAUCGCAACGGCGGCAAUGGCAACAGCAGUUGCCACGAGGCUGGAAUAGGAU .(((.((((..((.....))..)))).))).((((((((..(((....)))))..(((((((....)))))))..))))))......... ( -35.90) >DroEre_CAF1 16568 90 - 1 GCGGCGGAGGAGGAGGAACCAAUUCCACCGAUGGCCUGCAUCGCAACGGCGGCAAUGGCAACAGCAGUUGCCACGAGGCUGGAAUAGGAU .(((.((((..((.....))..)))).)))..(((((((..(((....)))))..(((((((....)))))))..))))).......... ( -33.10) >DroYak_CAF1 12331 90 - 1 GCGGCGGAGGAGGAGGAAACAAUUCCACCGAUGGCCUGCAUCGCAACGGCGGCAAUGGCAACAGCAGUUGCCACGAGGCUGGAAUAGGAU ....(((.((((..(....)..)))).)))..(((((((..(((....)))))..(((((((....)))))))..))))).......... ( -33.30) >consensus GCGGCGGAGGAGGAGGAACCAAUUCCACCGAUGGCCUGCAUCGCAACGGCGGCAAUGGCAACAGCAGUUGCCACGAGGCUGGAAUAGGAU .(((.((((..((.....))..)))).))).((((((((..(((....)))))..(((((((....)))))))..))))))......... (-32.16 = -32.32 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:52 2006