Locus 6946

Sequence ID 3L_DroMel_CAF1
Location 18,714,664 – 18,714,770
Length 106
Max. P 0.524879
window11267

overview

Window 7

Location 18,714,664 – 18,714,770
Length 106
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 75.28
Mean single sequence MFE -30.91
Consensus MFE -20.32
Energy contribution -19.97
Covariance contribution -0.36
Combinations/Pair 1.45
Mean z-score -1.08
Structure conservation index 0.66
SVM decision value -0.02
SVM RNA-class probability 0.524879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18714664 106 + 23771897
CCUGGUGCACCAUUGUCCAACUUGGCAGUGGGCCGCUGGCGAUGAGACCAAGACAAAACCCUACCUACCAAAGGGUAUGUGCUGCGAUUUUCC---ACUAAUAACUAGC
.(((((((.((((((((......))))))))))(((((((.....).)))((.((..(((((.........)))))...))))))).......---.......))))). ( -29.10)
>DroVir_CAF1 3476 107 + 1
CUUAGUCCACCAUUGUCCCACUUGGCAGUGGGCGGCGGGCGAUGAAAGCAAAACAAAGCCGUACUUGCCAAAGGGUAAAGAAAA--ACUAGAAACUAAUAUUAAUUAAU
(((..(((.((((((((......))))))))..((((((..(((...((........))))).))))))...)))..)))....--....................... ( -24.80)
>DroPse_CAF1 41345 109 + 1
CUUAGUACACCAUUGCCCCACCUGGCAGUGGGCGGCGGGAGAUGAUACGAAAACAAAACCGUACUUACCGAAGGGUGAGUAAUGCGACGCGACGCGGCUAUUACUGAAC
.((((((..((((((((......))))))))((.(((........................((((((((....)))))))).(((...))).))).))...)))))).. ( -38.40)
>DroSec_CAF1 3497 106 + 1
CCUGGUGCACCAUUGUCCCACUUGGCAGUGGGCCGCUGGCGAUGAGACGAAGACAAAACCUUACCUACCAAAGGGUGUGUGCUGCGAUUUGCC---ACUAAUAACUAGC
.(((((((.((((((((......))))))))))...((((((.....((.(((((...((((........))))...))).)).))..)))))---)......))))). ( -31.50)
>DroAna_CAF1 4546 104 + 1
CUUGGUGCAUCAUUGUCCCACUUGGCAAUGGGCUGCCGGCGAUGAAACCAAAACGAAACCUUAUUUACCCAAAGGUGACUACUGCGAUUUGCC---AAUAACCAUUA--
...(((((.((((((((......)))))))))).)))(((((...............(((((.........)))))............)))))---...........-- ( -23.23)
>DroPer_CAF1 44208 109 + 1
CUUAGUACACCAUUGCCCCACCUGGCAGUGGGCGGCGGGAGAUGAUACGAAAACAAAACCGUACUUACCGAAGGGUGAGUAAUGCGACGCGACGCGGCUAUUACUGAAC
.((((((..((((((((......))))))))((.(((........................((((((((....)))))))).(((...))).))).))...)))))).. ( -38.40)
>consensus
CUUAGUGCACCAUUGUCCCACUUGGCAGUGGGCGGCGGGCGAUGAAACCAAAACAAAACCGUACUUACCAAAGGGUGAGUAAUGCGACUUGAC___ACUAAUAAUUAAC
.(..(((..((((((((......))))))))..)))..)......................((((((((....))))))))............................ (-20.32 = -19.97 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:50 2006