Locus 6945

Sequence ID 3L_DroMel_CAF1
Location 18,707,934 – 18,708,036
Length 102
Max. P 0.885889
window11265 window11266

overview

Window 5

Location 18,707,934 – 18,708,036
Length 102
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.10
Mean single sequence MFE -31.23
Consensus MFE -13.32
Energy contribution -17.43
Covariance contribution 4.11
Combinations/Pair 1.05
Mean z-score -3.05
Structure conservation index 0.43
SVM decision value 0.44
SVM RNA-class probability 0.735939
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18707934 102 + 23771897
UAGUAGUUCACCCACAUA------AGCUGCGAGGGACACGUGAGGUUUCCCAGCGACA--AAAGUACGAAAUAUGUGGGCAUAAUAUACAUAUUGUAGAA---AUAUGU-------AUAU
..........((((((((------.((((.(.(..((.(....)))..)))))).((.--...))......))))))))....(((((((((((.....)---))))))-------)))) ( -33.40)
>DroSec_CAF1 37385 94 + 1
UUGUAGUUCACCCACAUA------AGCUGCGAGGGACACGUGAGGUUUCCCAGCGACA--AAAGUACGAAAUAUGUGGGCAUAAUAUACAUAUUGUAC------------------AUAU
.((((.....((((((((------.((((.(.(..((.(....)))..)))))).((.--...))......)))))))).......))))........------------------.... ( -26.00)
>DroAna_CAF1 36072 117 + 1
UUGUAGUUCACCCACAUACUCGUGAGCUGUGAGGGACACGUGAGGUUUCUCAGCGACAGAAAAAUACAAAAUUUCUGUGAAA---GAACAUAUAGUAAGGCCUGUAUGUAUGGUACGUAU
...((((((((..........))))))))((((..((.(....)))..))))((((((((((.........)))))))....---..((((((((......))))))))......))).. ( -34.30)
>consensus
UUGUAGUUCACCCACAUA______AGCUGCGAGGGACACGUGAGGUUUCCCAGCGACA__AAAGUACGAAAUAUGUGGGCAUAAUAUACAUAUUGUAA______UAUGU_______AUAU
..........((((((((.......((((.(.(..((.(....)))..)))))).((......))......))))))))......................................... (-13.32 = -17.43 +   4.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 18,707,934 – 18,708,036
Length 102
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 73.10
Mean single sequence MFE -26.77
Consensus MFE -12.86
Energy contribution -13.53
Covariance contribution 0.67
Combinations/Pair 1.14
Mean z-score -2.60
Structure conservation index 0.48
SVM decision value 0.94
SVM RNA-class probability 0.885889
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18707934 102 - 23771897
AUAU-------ACAUAU---UUCUACAAUAUGUAUAUUAUGCCCACAUAUUUCGUACUUU--UGUCGCUGGGAAACCUCACGUGUCCCUCGCAGCU------UAUGUGGGUGAACUACUA
((((-------((((((---(.....)))))))))))...(((((((((....(.((...--.)))(((((....))....(((.....)))))).------)))))))))......... ( -29.80)
>DroSec_CAF1 37385 94 - 1
AUAU------------------GUACAAUAUGUAUAUUAUGCCCACAUAUUUCGUACUUU--UGUCGCUGGGAAACCUCACGUGUCCCUCGCAGCU------UAUGUGGGUGAACUACAA
..((------------------((((.....))))))...(((((((((....(.((...--.)))(((((....))....(((.....)))))).------)))))))))......... ( -25.20)
>DroAna_CAF1 36072 117 - 1
AUACGUACCAUACAUACAGGCCUUACUAUAUGUUC---UUUCACAGAAAUUUUGUAUUUUUCUGUCGCUGAGAAACCUCACGUGUCCCUCACAGCUCACGAGUAUGUGGGUGAACUACAA
.(((((......((((.((......)).))))(((---((..(((((((.........)))))))....))))).....)))))((.(((((((((....))).)))))).))....... ( -25.30)
>consensus
AUAU_______ACAUA______CUACAAUAUGUAUAUUAUGCCCACAUAUUUCGUACUUU__UGUCGCUGGGAAACCUCACGUGUCCCUCGCAGCU______UAUGUGGGUGAACUACAA
.......................................((((((((((....(.((......)))((((((....)))..(((.....)))))).......))))))))))........ (-12.86 = -13.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:49 2006