Locus 6944

Sequence ID 3L_DroMel_CAF1
Location 18,707,027 – 18,707,147
Length 120
Max. P 0.855267
window11264

overview

Window 4

Location 18,707,027 – 18,707,147
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -26.48
Consensus MFE -24.42
Energy contribution -25.17
Covariance contribution 0.75
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.80
SVM RNA-class probability 0.855267
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18707027 120 + 23771897
UCCUCGUAUAGUUUUUCAACCAAAAGCUAUUAAUAUUCAUCAAUUAUUCAGUAAUUGAUGGUUGAUACAUGAAGAGUACAUUUAAGCGGGUCAGCUCAAACGAAAACUGUUUGGGCUCAA
..((((((((((((((.....)))))))))......(((((((((((...)))))))))))........................)))))..((((((((((.....))))))))))... ( -30.20)
>DroSec_CAF1 36493 120 + 1
CACACGUAUAGUUUUUCAUCCAAGAGCUAUUAAUAUUCAUCAAUUAUUCAGUAAUUGCUGGUUGAUACAUGAGGAGUUCAUUUAAACGGGUCAGCUCAAACGAAAACUGUUUGGGUUCAA
....(((.((((((((.....))))))))((((.((((.(((((((..((((....))))..))))...))).))))....)))))))....((((((((((.....))))))))))... ( -24.40)
>DroSim_CAF1 37751 120 + 1
CACACGUAUAGUUUUUCAUCCAAAAGCUAUUAAUAUUCAUCAAUUAUUCAGUAAUUGAUGGUUGAUACAUGAGGAGUACAUUUAAACGGGUCAGCUCAAACGAAAACUGUUUGGGUUCAA
....(((.(((.......(((..(.(.(((((((...((((((((((...)))))))))))))))))).)..)))......))).)))....((((((((((.....))))))))))... ( -25.12)
>DroYak_CAF1 38119 120 + 1
CACUCGUAUAGUUUUUCAUCCAAAAGCUAUUAAUAUCCAUCAAUAAUUCAGUAAUUGAUGGUUGAUACAUGAAGAGUCAACUUAAACGGGUCAGCUCAAACGAAAACUGUUUGCGUUCAA
.(((((((((((((((.....))))))))).......(((((((.........)))))))((((((.(.....).))))))....)))))).(((.((((((.....)))))).)))... ( -26.20)
>consensus
CACACGUAUAGUUUUUCAUCCAAAAGCUAUUAAUAUUCAUCAAUUAUUCAGUAAUUGAUGGUUGAUACAUGAAGAGUACAUUUAAACGGGUCAGCUCAAACGAAAACUGUUUGGGUUCAA
.(((((((((((((((.....)))))))))......(((((((((((...)))))))))))........................)))))).((((((((((.....))))))))))... (-24.42 = -25.17 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:47 2006