Locus 6943

Sequence ID 3L_DroMel_CAF1
Location 18,706,843 – 18,706,952
Length 109
Max. P 0.934789
window11263

overview

Window 3

Location 18,706,843 – 18,706,952
Length 109
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 89.26
Mean single sequence MFE -25.30
Consensus MFE -22.44
Energy contribution -22.75
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.89
SVM decision value 1.24
SVM RNA-class probability 0.934789
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18706843 109 + 23771897
-----AGGCAGAGGCUGAGCCCAAAA----AAAGGAAAAGUCCUUGCACGAAAACGUGUACUCAAAAACAUAAGAGCGAAUAAGCCGAAAAGCUAUCAACUUGACCUUUAGCCUUUAA
-----....(((((((((((.(....----.(((((....)))))(((((....)))))..............).)).....(((......))).............))))))))).. ( -24.40)
>DroSec_CAF1 36305 113 + 1
-----AAGCAGAGGCUGAGCCCAAAAAAAAAAAGGAAAAGUCCUUGCACGAAGGCGUGUACUCAAAAACAUAAGAGCGAAUAAGCCGAAAAGCUACCAACUUGACCUUUAGCCUUUAA
-----....(((((((((((.(.........(((((....)))))(((((....)))))..............).)).....(((......))).............))))))))).. ( -24.60)
>DroSim_CAF1 37563 113 + 1
-----AAGCAGAGGCUGAGCCCAAAAAGAGAAAGGAAAAGUCCUUGCACGAAGGCGUGUACUCAAAAACAUAAGAGCGAAUAAGCCGAAAAGCUACCAACUUGACCUUUAGCCUUUAA
-----....((((((((((..(((...(((.(((((....)))))(((((....))))).)))..........(.((......)))..............)))...)))))))))).. ( -26.20)
>DroYak_CAF1 37931 110 + 1
AACUGAAGCAGAGGCUGAGCCCAAA------AAGGAAAAGUCCUUGCACGACAACGUGUGCUCAA--ACAUAAGAGCGAAUAAGCCGAAAAGCAACCAACUUGACCUGUGGCCUUUAA
.........(((((((((((.....------(((((....)))))(((((....)))))))))).--.((((.(.((......)))......(((.....)))...)))))))))).. ( -26.00)
>consensus
_____AAGCAGAGGCUGAGCCCAAAA____AAAGGAAAAGUCCUUGCACGAAAACGUGUACUCAAAAACAUAAGAGCGAAUAAGCCGAAAAGCUACCAACUUGACCUUUAGCCUUUAA
.........(((((((((((.(.........(((((....)))))(((((....)))))..............).)).....(((......))).............))))))))).. (-22.44 = -22.75 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:46 2006