| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,706,170 – 18,706,263 |
| Length | 93 |
| Max. P | 0.610403 |
| Location | 18,706,170 – 18,706,263 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Mean single sequence MFE | -19.00 |
| Consensus MFE | -14.44 |
| Energy contribution | -14.00 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18706170 93 + 23771897 CCCGUACAAAAACG------AUUAUUCGGCAGCAUAACUAUUGUGUAAAGGACGAUUCUGCUGUUUUGGUCAAAAACCAAUAGUACACAAAAUGUAGCC ...((((.....((------(....)))((((((.....(((((.......)))))..)))))).(((((.....)))))..))))............. ( -18.70) >DroSec_CAF1 35628 91 + 1 GCCAUACAAAAAAG---UGGAAUAUUCGGCAGCAUAACUA-----UAAAGGACGAUUCUGCUGUCCUGGUCAAAAACCAAUCAUACACAAAAUGUAGCC .((((........)---))).......(((.((((.....-----...((((((.......))))))(((.....))).............)))).))) ( -18.80) >DroSim_CAF1 36896 94 + 1 CCCAUACAAAAAAGAUAUGGAAUAUUCGGCAGCAUAACUA-----UAAAGGACGAUUCAGCUGUCCUGGUCAAAAACCAAUCAUACACAAAAUGUAGCC .((((((......).))))).......(((.((((.....-----...((((((.......))))))(((.....))).............)))).))) ( -19.50) >consensus CCCAUACAAAAAAG___UGGAAUAUUCGGCAGCAUAACUA_____UAAAGGACGAUUCUGCUGUCCUGGUCAAAAACCAAUCAUACACAAAAUGUAGCC ...........................(((.((((.............((((((.......))))))(((.....))).............)))).))) (-14.44 = -14.00 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:45 2006