Locus 6941

Sequence ID 3L_DroMel_CAF1
Location 18,705,179 – 18,705,295
Length 116
Max. P 0.500000
window11261

overview

Window 1

Location 18,705,179 – 18,705,295
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.65
Mean single sequence MFE -34.06
Consensus MFE -26.72
Energy contribution -27.16
Covariance contribution 0.44
Combinations/Pair 1.11
Mean z-score -1.39
Structure conservation index 0.78
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18705179 116 + 23771897
AUUUGCAUAAUAAUAAAGCUGCUGAUGUGCCAGAAUCAGGAGCGGAGUCCGCACAGAAGCGUCUUUUCUGCUCUGGCCUUUUGGCUGCCACGUCCAGUGU---GUAUUCC-CAGUCUCCU
...........((((..((((..((((((.(.......(((((((((..(((......)))....)))))))))((((....))))).))))))))))..---.))))..-......... ( -33.20)
>DroSec_CAF1 34612 116 + 1
AUUUGCAUAAUAAUACAGCUGCUGAUGUGCCAGAAUCAGGAGCGGAAUCCGCACAGAAGCGUCUUUUCUGCUCUGGCCUUUUGGCUGCCACGUCCAGUGU---GUAUUCC-CAGUCUCCU
...........((((((((((..((((((.(.......(((((((((..(((......)))....)))))))))((((....))))).)))))))))).)---)))))..-......... ( -36.10)
>DroAna_CAF1 33566 120 + 1
AUUUGCAUAAUAAUCAAGCUGCUGAUGUGCCAGAAUCAGGAGCAAAAUCCGCAGAGAAGCGGCUUUUCUCCUCUGGCCUUUUGACUGCCACGUCCAGCAUCGGGUAUCCUGCAGUAUCCU
.................(((((.(((((((((((....((((.((((.((((......)))).)))))))))))))).....(((......)))..)))))((....)).)))))..... ( -37.90)
>DroSim_CAF1 35872 116 + 1
AUUUGCAUAAUAAUAAAGCUGCUGAUGUGCCAGAAUCAGGAGCGGAAUCCGCACAGAAGCGUCUUUUCUGCUCUGGCCUUUUGGCUGCCACGUCCAGUGU---GUAUUCC-CAGUCUGCU
................(((.((((....(((((((...(((((((((..(((......)))....)))))))))....)))))))((((((.....))).---)))....-))))..))) ( -36.30)
>DroYak_CAF1 36273 114 + 1
AUUUGCAUAAUAAUAAAGCUGCUGAUGUGCCAUAAUCAGGAGCAGAAUCCGCACAGAAGCGUCUUUUCUCCUCUGGCCUUUUGCCUGCCACGUCCAGU-----GAAUUCC-CAACCUCCC
.................((((..((((((.((.....(((((.((((..(((......)))..)))))))))..(((.....))))).))))))))))-----.......-......... ( -26.80)
>consensus
AUUUGCAUAAUAAUAAAGCUGCUGAUGUGCCAGAAUCAGGAGCGGAAUCCGCACAGAAGCGUCUUUUCUGCUCUGGCCUUUUGGCUGCCACGUCCAGUGU___GUAUUCC_CAGUCUCCU
.................((((..((((((.(.......(((((((((..(((......)))....)))))))))((((....))))).))))))))))...................... (-26.72 = -27.16 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:44 2006