Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,082,791 – 2,082,911 |
Length | 120 |
Max. P | 0.649080 |
Location | 2,082,791 – 2,082,911 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -46.20 |
Consensus MFE | -33.19 |
Energy contribution | -32.95 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.34 |
Mean z-score | -2.07 |
Structure conservation index | 0.72 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649080 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2082791 120 - 23771897 ACAUAUUCGCAAGGAGGAUGAGGGCGUGUACAUGUGCCGCGCCGUCAAUCCACUGGGUGAGGCAGUAACCACCGCCUCUAUGCGCGUGGUAUCUGAGGCCAGCAUCCAAAUGGAUACUCA .......(....)(((..(((.((((((((....)).)))))).)))(((((.((((((.(((..((((((((((......))).)))))...))..)))..))))))..))))).))). ( -47.20) >DroVir_CAF1 160533 120 - 1 GCACAUCCGUAAGGAGGACGAGGGCGUUUACAUGUGCCGCGCCAUCAAUCCGCUGGGUGAGGCUGUCACCACCGCUUCUAUGCGCGUGGUUACUGAGGCCAGCAUCCAAAUGGAUACUCA (..(.(((....))))..)((((((((...........)))))....(((((.((((((.((((((.((((((((......))).))))).))...))))..))))))..))))).))). ( -46.10) >DroGri_CAF1 135130 120 - 1 GCACAUCCGCAAAGAGGAUGAGGGCGUCUACAUGUGCCGCGCUGUCAAUCCACUUGGCGAGGCAGUCACCACCGCCUCAAUGCGUGUGGUGAGCGAGGCUAGCAUCUUAAUGGACACCCA ...(((((.......))))).(((.(((((.(((((((.(((((((...((....))...)))).((((((((((......))).)))))))))).)))..)))).....))))).))). ( -49.30) >DroWil_CAF1 179311 120 - 1 CCAUAUCCGAAAGGAAGAUGAGGGAGUGUACAUGUGCCGUGCUGUCAAUCCUUUGGGUGAAGCUGUCACAACAGCUUCGAUGCGCGUCGUAUCUGAAGCUAGUAUUCAGAUGGACACACA .(((.(((....)))..))).....((((.........((((.(((.((((...))))((((((((....)))))))))))))))(((.((((((((.......))))))))))))))). ( -43.80) >DroMoj_CAF1 138961 120 - 1 GCACAUCCGCAAGGAGGAUGAGGGCGUCUACAUGUGCCGCGCUGUCAAUCCACUUGGCGAGGCCGUCACUACCGCCUCUAUGCGUGUGGUUACCGAGGCCACCAUCCAAAUGGAUACCCA .....(((....)))(((((..(((.((.......(((((((.(((((.....)))))(((((.((....)).))))).....)))))))....)).)))..)))))...(((....))) ( -47.60) >DroAna_CAF1 141273 120 - 1 GCACAUCCGCAAGGAGGACGAGGGCGUUUACAUGUGCCGCGCCGUCAAUCCUUUGGGCGAGGCCGUAACCACAGCCUCUAUGCGCGUGGUUUCAGAAGCCAGCAUCCAAAUGGACACCCA .....(((....)))((..((.(((((...........))))).))..(((((((((.(((((.((....)).))))).....((.(((((.....))))))).)))))).)))...)). ( -43.20) >consensus GCACAUCCGCAAGGAGGAUGAGGGCGUCUACAUGUGCCGCGCCGUCAAUCCACUGGGCGAGGCAGUCACCACCGCCUCUAUGCGCGUGGUUACUGAGGCCAGCAUCCAAAUGGACACCCA .....(((....)))(((((..(((.((.......(((((((.......((....)).(((((.((....)).))))).....)))))))....)).)))..)))))............. (-33.19 = -32.95 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:42 2006