Locus 6938

Sequence ID 3L_DroMel_CAF1
Location 18,703,789 – 18,703,908
Length 119
Max. P 0.500000
window11252

overview

Window 2

Location 18,703,789 – 18,703,908
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.67
Mean single sequence MFE -37.40
Consensus MFE -27.00
Energy contribution -27.92
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -1.54
Structure conservation index 0.72
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18703789 119 - 23771897
UAAUCAAUUUUUCCCAGUGUAGAUACGUUUCGUACCGCU-GCUUUGUGGGCUACAAAAUGGCAUCGCAUGGGGCGAUAAGUGCAGCUGGGGCAGGAACAGAAGCUGCAGCCAUAGGAAAC
.........(((((...(((((.((((...))))((((.-.....)))).)))))..((((((((((.....)))))...(((((((..(.......)...)))))))))))).))))). ( -39.80)
>DroSec_CAF1 33130 119 - 1
UAAACAAUUUUUCCCAGUGUAGAUACGUUUCGUACCGCU-GCUUUGUGGGCUACAAAAUGGCAUCGCAUGGGCCGAUAAGUGCAGCUGGGGCAGGAACAGAAGCUGCAGCCAUAGGAAAC
.........(((((..((((((....((((((..(((((-(((((((.((((.....(((......))).)))).))))).))))).))..).))))).....))))).)....))))). ( -36.30)
>DroAna_CAF1 32363 120 - 1
AUUUUAAAUUCUCUCUGUGUAACUGAGUCUCUUUUCUUUCCCUUUUCAGGCCACAGAAUGGCAUCCUAUAAGGCGAUAAAUGCAGCUGAGGCUGGAACAGAGGCUGCAGCCAUAGGAAAC
...........((.(((((...((((((((((.(((..((((((.....((((.....)))).......)))).))......((((....))))))).))))))).))).)))))))... ( -34.40)
>DroSim_CAF1 34372 119 - 1
UAAACAAUUUUUACCAGUGUAGAUACGUUUCAUACCGCU-GCUUUGUGGGCUACAAAAUGGCAUCGCAUGGGGCGAUAAGUGCAGCUGGGGCAGGAACAGAAGCUGCAGCCAUAGGAAAC
.............((..(((((............((((.-.....)))).)))))..((((((((((.....)))))...(((((((..(.......)...)))))))))))).)).... ( -35.32)
>DroYak_CAF1 34709 119 - 1
UAAGUAAUUUCUCCCUGUGUAGAUACUGCUCGUACCGCC-GCUUUGUGGGCCACAAAAUGGCAUCGCAUAAGGCGAUAAGUGCAGCUGGGGCAGCAACAGAGGCUGCAGCCAUAGGAAAC
.............((((((.......(((.(.((.((((-....(((((((((.....)))).)))))...)))).)).).)))((((.(((..(....)..))).)))))))))).... ( -41.20)
>consensus
UAAACAAUUUUUCCCAGUGUAGAUACGUUUCGUACCGCU_GCUUUGUGGGCUACAAAAUGGCAUCGCAUGGGGCGAUAAGUGCAGCUGGGGCAGGAACAGAAGCUGCAGCCAUAGGAAAC
.............((..(((((.(((.....)))((((.......)))).)))))..((((((((((.....)))))...(((((((..(.......)...)))))))))))).)).... (-27.00 = -27.92 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:35 2006