| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,703,327 – 18,703,433 |
| Length | 106 |
| Max. P | 0.684223 |
| Location | 18,703,327 – 18,703,433 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.00 |
| Mean single sequence MFE | -22.83 |
| Consensus MFE | -9.64 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684223 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18703327 106 - 23771897 GUGCCUCCCAUUCGAGCCAUAGAAAUUGCUAAUGCAUUCAACAGUCACAUCG------CCACAUACAUACGUCUUUAUA--------CAUGGCUUGUGAAAUACCUAAGCUUUAGUCAUA (((.(((......))).)))....((.(((((.((.........(((((..(------(((..................--------..)))).))))).........)).))))).)). ( -17.52) >DroSec_CAF1 32715 116 - 1 GAGCCUCGCAUUCGAGCCAUAGAAAUUGCUAAUGCAUUCAACAGUCACAUCGCAAGGCCCACAUACAUACGUCUUUAUAUG--UA--UAUGGCUUGCGAAAUACCUCUACUUUAUACAUA (((....(((((..(((.((....)).))))))))..............(((((((..(((.(((((((........))))--))--).)))))))))).....)))............. ( -26.30) >DroAna_CAF1 31935 84 - 1 GAGCCAGCUAUUCAGGCCAAAGGAAUUGCUAAUGCAUUCAACAGUGGCAUCA--A--------------CAUCUUCAUCU-------CAGGGUCUCAGCUAUACC-------------UU (((((..((....))((((...((((.((....)))))).....))))....--.--------------...........-------...)).))).........-------------.. ( -15.70) >DroSim_CAF1 33932 117 - 1 GAGCCUCGCAUUCGAGCCAUAGAAGG-CCUAAUGCAUUCAACAGUCACAUCGCAAGAGCCACAUACAUACCUCUUUAUAUG--UAUAUAUGGCUUGCGAAAUACCUCAGCUUUAUACAUA ((((...(((((.(.(((......))-)).)))))..............(((((..(((((.(((((((........))))--)))...)))))))))).........))))........ ( -31.00) >DroEre_CAF1 33307 106 - 1 GAGCCUCCCGUUCGAGCCAUGGAAAUUGCUAAUGCAUUCAACAGUCACAUCGCAAGGCCCACA----UACGUCCUUAAAUA----UAUAUGGCUUGCGAAAUACCCCAGCUUUA------ ((((.....))))((((..(((....(((....))).............(((((((..(((.(----((..(......)..----))).))))))))))......)))))))..------ ( -22.20) >DroYak_CAF1 34237 106 - 1 GAGCCUCCCAUUCGAGCCAUAGAAAUUGCUAAUGCAUUCAACAGUCACAU----ACGUCUUUA----UAUGUUCAUACAUAUCUCUAUAUGGCUUGCGAAAUAGCUCAACUAUA------ ((((........((((((((((((..(((....))))))...........----........(----(((((....)))))).....))))))))).......)))).......------ ( -24.26) >consensus GAGCCUCCCAUUCGAGCCAUAGAAAUUGCUAAUGCAUUCAACAGUCACAUCG__AGG_CCACA____UACGUCUUUAUAU_______UAUGGCUUGCGAAAUACCUCAGCUUUA____UA ............((((((((((((..(((....))))))....(......)....................................)))))))))........................ ( -9.64 = -10.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:34 2006