Locus 6935

Sequence ID 3L_DroMel_CAF1
Location 18,701,020 – 18,701,138
Length 118
Max. P 0.677495
window11241

overview

Window 1

Location 18,701,020 – 18,701,138
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.83
Mean single sequence MFE -35.17
Consensus MFE -21.83
Energy contribution -23.70
Covariance contribution 1.87
Combinations/Pair 1.06
Mean z-score -2.41
Structure conservation index 0.62
SVM decision value 0.30
SVM RNA-class probability 0.677495
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18701020 118 - 23771897
GUGCAGCAUGUGUUUGGCAUUUAGUUGAGUUUUUAUUGCAGCUGGAAUUUAAAACAACCCA-UUUUGUGUUGCUGGGCAAUCGUGCGCCAUAAAUGGAGUUGUGUACAAGUGUGUGCGA-
.....(((((..((((((.(((((((((((....))).)))))))).......((((((((-(((.(((.((((((....))).))).))))))))).))))))).))))..)))))..- ( -34.60)
>DroSec_CAF1 30451 118 - 1
GUGCAGCAUUUGUUUGGCAUUUAGUUGAGUUUUUAUUUCAGCUGGAAUUUAUAACAACCCA-UUUUGUGUUGCUGGGCAAUCGUGCGCUAUAAAUGGAGUUGUGUACAAGUGUGUGCGU-
(..((.(((((((...((.((((((((((.......)))))))))).......((((((((-(((.(((.((((((....))).))).))))))))).))))))))))))))))..)..- ( -35.60)
>DroAna_CAF1 29093 120 - 1
GUGCAGCAUGUGUUUGGCAUUUAGUUGCGUUUCCAUUUCUGCCCGAGUGUAUAACAACCCAGUUUUGUGUUGCUGGGCAAUCGUGCGAUAUAAAUGGAGUUAUUUCUCUAUUUGUGCACU
((((.(((((...((((((......)))(((..(((((......)))))...)))..((((((........))))))))).)))))...((((((((((......)))))))))))))). ( -38.30)
>DroSim_CAF1 31625 113 - 1
GUGCAGCAUGUGUUUGGCAUUUAGUUGAGUUUUUAUUUCAGCUGGAAUUUAUAACAACCCA-UUUUGUGUUGCUGGGCAAUCGUGCGCUAUAAAUGGAGUUGUGUACAACUGUA------
..((.(((((((((..(((((((((((((.......)))))))))).......((((....-..))))..)))..))))..)))))))......((.(((((....))))).))------ ( -32.20)
>consensus
GUGCAGCAUGUGUUUGGCAUUUAGUUGAGUUUUUAUUUCAGCUGGAAUUUAUAACAACCCA_UUUUGUGUUGCUGGGCAAUCGUGCGCUAUAAAUGGAGUUGUGUACAAGUGUGUGCG__
((((((((((((((..(((((((((((((.......)))))))))).......((((.......))))..)))..))))..))))).(((....))).....)))))............. (-21.83 = -23.70 +   1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:26 2006