Locus 6934

Sequence ID 3L_DroMel_CAF1
Location 18,699,958 – 18,700,050
Length 92
Max. P 0.507060
window11240

overview

Window 0

Location 18,699,958 – 18,700,050
Length 92
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 87.12
Mean single sequence MFE -23.92
Consensus MFE -22.65
Energy contribution -22.65
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.87
Structure conservation index 0.95
SVM decision value -0.05
SVM RNA-class probability 0.507060
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18699958 92 - 23771897
UUUUGUUGACAAUCCAUGUGACAGGCCACCACCUCGUCCUCCGCAGACUCCGCAGCCUCCGCUCCAUCUGCUGUUUGUCUGGAGGGUCGACC
....((((((..(((....((((((......))).)))......((((...(((((.............)))))..)))))))..)))))). ( -27.12)
>DroSec_CAF1 29394 79 - 1
UUUUGUUGACAAUCCAUGUGACAGGCC----CCUCGUCCUCC---------GCAGCCCCCGUUCCAUCUGCUGUAUGUCUGGAGGGUCGACC
....((((((..((((...(((((((.----....)))....---------(((((.............))))).))))))))..)))))). ( -22.22)
>DroSim_CAF1 30577 80 - 1
UUUUGUUGACAAUCCAUGUGACAGGCCC---CCUCGUCCUCC---------GCAGCCACCGCUCCAUCUGCUGUAUGUCUGGAGGGUCGACC
....((((((..((((...(((((((..---....)))....---------(((((.............))))).))))))))..)))))). ( -22.42)
>consensus
UUUUGUUGACAAUCCAUGUGACAGGCC____CCUCGUCCUCC_________GCAGCCACCGCUCCAUCUGCUGUAUGUCUGGAGGGUCGACC
....((((((..((((...((((((......))).))).............(((((.............))))).....))))..)))))). (-22.65 = -22.65 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:24 2006