Locus 6933

Sequence ID 3L_DroMel_CAF1
Location 18,697,113 – 18,697,206
Length 93
Max. P 0.797820
window11239

overview

Window 9

Location 18,697,113 – 18,697,206
Length 93
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.86
Mean single sequence MFE -22.79
Consensus MFE -18.96
Energy contribution -19.16
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.83
SVM decision value 0.61
SVM RNA-class probability 0.797820
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18697113 93 - 23771897
CACUGUCAAUCCGACAAAUCCUUUGCCACCGUUUGUCGCAGCACUUGCCUCGGAUUGCAGACACAUCCCGACUUCCUCCG-------GCAGCUUCUCGCU
..(((.(((((((((((((...........)))))))((((...))))...))))))))).......(((........))-------).(((.....))) ( -22.40)
>DroSec_CAF1 26444 93 - 1
CACUGUCAAUCCGACAAAUCCUUUGCCACCGUUUGUCGCAGCACUUGCCUCGGAUUGCAGACACAUCCCGACUUCCUCCG-------GCAGCUUCUCGCU
..(((.(((((((((((((...........)))))))((((...))))...))))))))).......(((........))-------).(((.....))) ( -22.40)
>DroSim_CAF1 27615 93 - 1
CACUGUCAAUCCGACAAAUCCUUUGCCACCGUUUGUCGCAGCACUUGCCUCGGAUUGCAGACACAUCCCGACUUCCUCCG-------GCAGCAUCUCGCU
..(((.(((((((((((((...........)))))))((((...))))...))))))))).......(((........))-------).(((.....))) ( -22.50)
>DroEre_CAF1 26802 93 - 1
GACUGUCAAUCCGUCAAAUCCUUUGCCACCGUUUGUCGCAGCACUUGCCUCGGAUUGCAGACACAUCCCCGCCUCCUGCG-------GCAGCUUCUCGCU
..(((.(((((((.........((((.((.....)).)))).........))))))))))........((((.....)))-------).(((.....))) ( -22.97)
>DroYak_CAF1 27708 100 - 1
GGCUGUCAAUCCGACAAAUCCUUUGCCACCGUUUGUCGCAGCACUUGCCUCGGAUUGCAGACACAUCCCGACCUCCUGCUCUUAUCACGAGCUUCUCGCU
..(((.(((((((((((((...........)))))))((((...))))...)))))))))........(((......((((.......))))...))).. ( -23.70)
>consensus
CACUGUCAAUCCGACAAAUCCUUUGCCACCGUUUGUCGCAGCACUUGCCUCGGAUUGCAGACACAUCCCGACUUCCUCCG_______GCAGCUUCUCGCU
..(((.(((((((((((((...........)))))))((((...))))...))))))))).............................(((.....))) (-18.96 = -19.16 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:24 2006