Locus 6932

Sequence ID 3L_DroMel_CAF1
Location 18,694,204 – 18,694,310
Length 106
Max. P 0.763176
window11238

overview

Window 8

Location 18,694,204 – 18,694,310
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 88.89
Mean single sequence MFE -24.67
Consensus MFE -18.10
Energy contribution -18.22
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.99
Structure conservation index 0.73
SVM decision value 0.51
SVM RNA-class probability 0.763176
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18694204 106 + 23771897
CAAUAAGCUUUUCUAAGAAAGCAAUCACACAUCGAUGAUGCCCAAA-ACCUGACAUUAAGUCUUGUCUUGUUUUCGCCUCGUAUU-UUCCUGCCUGCAGGAAUUCUCC
......((((((....))))))............((((.((..(((-((..((((........))))..))))).)).))))...-((((((....))))))...... ( -24.40)
>DroSec_CAF1 23579 106 + 1
CAAUAAGCUUUUCUUAGAAAGCAAUCACACAUCGAUGAUGCCCAAA-CCCUGGCAUUAAGUCUUGUCUUGUUUUCGACUCGCAUU-UUCCUGCCUGCAGGAAUUCCCA
......((........((((((((..(((...(..(((((((....-....))))))).)...))).)))))))).....))...-((((((....))))))...... ( -24.82)
>DroSim_CAF1 23861 105 + 1
CAAUAAGCUUUUUUAAGAGAGCAAUCACACAUCGAUGAUGCCCACA-CCCUGGCAU-AAGUCUUGUC-UGUUUUCGCCUCGCAUUUUUCCUGCCGGCAGGAAUUCCCA
................(((.((...((.(((..(((.(((((....-....)))))-..))).))).-)).....)))))......((((((....))))))...... ( -22.50)
>DroEre_CAF1 23544 106 + 1
CAAUAAGCUUUUCUAAGAAGGCAAUCACACAUCGAUAAUGCCCAUAAAACUGGCAUUAAGUCUG-UUUUGUUUUCGCCUCGCAUU-UUCCUGCCUGCAGGAAUUCCCA
......((........((((((((..(((...(..(((((((.........))))))).)..))-).)))))))).....))...-((((((....))))))...... ( -23.42)
>DroYak_CAF1 24751 107 + 1
CAAUAAGCUUUUCUAAGAAAGCAAUCACGCAUCGAAAAUGCCCAUAGGCUUGGCAUUAAGUCUGGUCUUGUUUUCGCCUCGCGUU-UUCCUGCCUACAGGAAUUCCCA
......((((((....))))))....((((..(((((((.....((((((((....)))))))).....)))))))....)))).-((((((....))))))...... ( -28.20)
>consensus
CAAUAAGCUUUUCUAAGAAAGCAAUCACACAUCGAUGAUGCCCAAA_ACCUGGCAUUAAGUCUUGUCUUGUUUUCGCCUCGCAUU_UUCCUGCCUGCAGGAAUUCCCA
................((((((((........(...((((((.........))))))..).......))))))))...........((((((....))))))...... (-18.10 = -18.22 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:23 2006