Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,693,477 – 18,693,579 |
Length | 102 |
Max. P | 0.860043 |
Location | 18,693,477 – 18,693,579 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 83.81 |
Mean single sequence MFE | -23.02 |
Consensus MFE | -16.16 |
Energy contribution | -16.88 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.12 |
Mean z-score | -2.14 |
Structure conservation index | 0.70 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.860043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18693477 102 + 23771897 GCACAUCAGGUUUGCCCAUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCUCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG (((.........)))((((((((.........((((((.(.(((((....))))).)))).)))..................(((.....))).)))))))) ( -19.90) >DroSec_CAF1 22832 95 + 1 ------CACAUUUGCCCGUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCCCAUGUAACGAAUUUAAUCU-UUACGCUAACGCUUUCUGCGGGAAAAUGG ------..(((((.(((((......................(((((....))))).((((.((......)).-))))((....)).....))))).))))). ( -25.70) >DroSim_CAF1 22869 96 + 1 ------CACAUUUGCCCAUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG ------.........((((((((.........((((((.(.(((((....))))).)))).)))..................(((.....))).)))))))) ( -22.80) >DroEre_CAF1 22871 93 + 1 GCACACCCUGUUUGUCCACUUUCUUU--------CGUUUUCUGG-CUUUUGGCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAACGG .......((((((.(((.......((--------((((...(((-(.....))))...))))))..................(((.....)))))))))))) ( -23.10) >DroYak_CAF1 23965 101 + 1 GCACACCAUAUUUGCCCAUUUUCUUUUCAUUUCUCGUGUCCUGG-GUUUUGCCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG (((.........)))(((((((((.........((((....(((-(.....))))....))))...................(((.....)))))))))))) ( -23.60) >consensus GCACA_CACAUUUGCCCAUUUUCAUUCUUCUCUUCUUGUCCUGGGCUUUUGCCCAUGUAACGAAUUUAAUCUUUUACGCUAACGCUUUCUGCGGGAAAAUGG ...............((((((((..................(((((....)))))...........................(((.....))).)))))))) (-16.16 = -16.88 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:22 2006