Locus 6930

Sequence ID 3L_DroMel_CAF1
Location 18,693,073 – 18,693,180
Length 107
Max. P 0.843804
window11236

overview

Window 6

Location 18,693,073 – 18,693,180
Length 107
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 80.05
Mean single sequence MFE -21.57
Consensus MFE -13.88
Energy contribution -14.52
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -1.98
Structure conservation index 0.64
SVM decision value 0.76
SVM RNA-class probability 0.843804
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18693073 107 - 23771897
UGUAGUUCUUUUCUU-AU---UUUUUUUUGCUUCUUUGUCGUG--------UUUUUUGGAAACAAAAGGUAAAAGUUUCUGAUGCUAUUUGCUUGGAAUCUUUUCGCCAUAUAUUAUUA
...............-..---......................--------..(((((....)))))((((((((.(((..(.((.....)))..))).))))).)))........... ( -18.70)
>DroSec_CAF1 22437 109 - 1
UGUAGUUAUUUUCCU-------UU--UUUGCUUCUUUGCAGUGCUGAGUGUUUUUUUGGCAACAAAAGGUAAAAGUUUGUGAUGCUAUUUGCUUGGAAUCUUUGCGUCAUAUAUUAAU-
........(((.(((-------((--(((((......))))(((..((......))..)))..)))))).)))(((.((((((((..................)))))))).)))...- ( -22.47)
>DroSim_CAF1 22476 109 - 1
UGUAGUUCUUUUCCU-------UUUUUUUGCUUCUUUGCAGUGCAGAGUGUUUUUUUGGAAACAAAAGGUAAAAGUUUGUGAUGCUAUUUGCUUGGAAUCUUUGCGCCAUAUAUUA---
...............-------......(((......)))((((((((.(((((((((....))))((((((((((.......))).)))))))))))))))))))).........--- ( -23.30)
>DroEre_CAF1 22479 91 - 1
UGUAGUUCUUUA-UUUUG---UUUUUUUUGCG--------------------UUUUUGGAAACAAAAGGUAAAAGUUUCUGAUGCUAUUUGCUUGGAAUCUUUUCGCCAUAUAUU----
............-(((((---(((((......--------------------.....))))))))))((((((((.(((..(.((.....)))..))).))))).))).......---- ( -19.00)
>DroYak_CAF1 23542 113 - 1
UGUAGUUAUUUUCUUUUAUUUUUUUUUUUGCCUCUUUGCAG----GAGUGU-UUUUUGGAAACAAAAGGUAAAAGUUUCUGAUGCUAUUUGCUUGGAAUCUUUUCGCCAUAUAUUACU-
.(((((..................(((((((......))))----)))...-.(((((....)))))((((((((.(((..(.((.....)))..))).))))).)))....))))).- ( -24.40)
>consensus
UGUAGUUCUUUUCUU______UUUUUUUUGCUUCUUUGCAGUG__GAGUGUUUUUUUGGAAACAAAAGGUAAAAGUUUCUGAUGCUAUUUGCUUGGAAUCUUUUCGCCAUAUAUUA_U_
.....................................................(((((....)))))((((((((.((((((.((.....)))))))).))))).)))........... (-13.88 = -14.52 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:21 2006