Locus 693

Sequence ID 3L_DroMel_CAF1
Location 2,081,672 – 2,081,792
Length 120
Max. P 0.521233
window1060

overview

Window 0

Location 2,081,672 – 2,081,792
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.06
Mean single sequence MFE -36.07
Consensus MFE -23.20
Energy contribution -22.65
Covariance contribution -0.55
Combinations/Pair 1.50
Mean z-score -1.61
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.521233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2081672 120 - 23771897
UGGACAACCGCUGCAGGCCGCUGCCAAAUUUAAGUCCAUCUACGAUUUUGGCUACUGCGCUUUGGAUCUGACCAAUUCUUAUGCUGAGAACAGCGGUGUUUACACAUGUAAGGCUACUAA
((((((.((((((((((.(((.((((((.....((......))...))))))....))).))))...........(((((.....))))))))))))))))).................. ( -29.70)
>DroVir_CAF1 159414 120 - 1
UGGACAACCCCUGCAGGCCGCUGCCAAGUUUAAGUCCAUCUAUGACUUUGGCUAUUGUGCCCUGGAUCUGACCAAUGCGUAUGCCGAGAACAGCGGCAUCUAUACCUGCAAGGCCACCAA
(((.....((.((((((((((((.........((((.......))))(((((...(((((..(((......)))..))))).)))))...)))))))........))))).))...))). ( -35.70)
>DroGri_CAF1 134011 120 - 1
UGGUCAACCUCUGCAGGCAGCUGCCAAAUUCAAGUCCAUCUAUGACUUUGGCUACUGUGCUCUGGAUUUGAACAAUAGCUAUGCAGAGAACAGUGGCAUCUACACAUGCAAAGCCACCAA
((((....(((((((.((((..((((((.(((((.....)).))).))))))..))))(((.((........))..)))..)))))))....((.((((......))))...)).)))). ( -35.80)
>DroWil_CAF1 178192 120 - 1
CGGCCAACCAUUGCAGGCUGCAGCCAAAUUCAAGUCUAUUUAUGACUUUGGCUAUUGCGCAUUGGAUCUGAGCAACACAUAUGCCGAAAACAGCGGUGUUUACACCUGCAAGGCGACCAA
..(((..(((.(((..((...((((((.....((((.......))))))))))...))))).)))......(((........((........))((((....)))))))..)))...... ( -34.30)
>DroMoj_CAF1 137842 120 - 1
UGGCCAACCGUUGCAGGCAGCUGCCAAAUUCAAGUCCAUUUACGACUUUGGCUACUGCGCCCUGGACCUGAAUAACUCGUAUGCCGAGAACAGCGGCAUCUACACUUGCAAGGCCACAAA
(((((.....(((((((.((.((((..(((((.(((((...........(((......))).))))).)))))..((((.....))))......)))).))...)))))))))))).... ( -38.70)
>DroAna_CAF1 140154 120 - 1
CGGCCAGCCGCUCCAGGCCGCCGCUAAAUUCAAGUCCAUCUACGACUUCGGCUACUGCGCUUUGGACCUGACUAACUCGUACGCCGAAAACAGCGGCGUGUACACAUGCAAGGCCACCAA
.((((.(((......)))(((((((........(((.......)))((((((...((((..((((......))))..)))).))))))...)))))))((((....)))).))))..... ( -42.20)
>consensus
UGGCCAACCGCUGCAGGCCGCUGCCAAAUUCAAGUCCAUCUACGACUUUGGCUACUGCGCUCUGGAUCUGACCAACUCGUAUGCCGAGAACAGCGGCAUCUACACAUGCAAGGCCACCAA
.((((........((((.(((.((((.....(((((.......)))))))))....))).))))................((((((.......))))))............))))..... (-23.20 = -22.65 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:41 2006