Locus 6929

Sequence ID 3L_DroMel_CAF1
Location 18,692,750 – 18,692,852
Length 102
Max. P 0.595415
window11235

overview

Window 5

Location 18,692,750 – 18,692,852
Length 102
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 87.97
Mean single sequence MFE -15.76
Consensus MFE -12.68
Energy contribution -13.04
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.48
Structure conservation index 0.80
SVM decision value 0.12
SVM RNA-class probability 0.595415
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18692750 102 + 23771897
UUUUAGUGCACUCAUACAU-----ACACCCACAGACGGAUACUUAGUAUUUUACUGCCGACACUAAAGUCCAAGCACCAAAAGGAAACUUUGUCACACACACCAACA------------
.....((((..........-----.......(((..((((((...))))))..)))..(((......)))...))))..((((....))))................------------ ( -15.10)
>DroSec_CAF1 22111 107 + 1
UUUUAGUGCACUCAUACAUAUAGUACACCCACAGAAGGAUACUUAGUAUUUUACUGCCGACACUAAAGUCCAAGCACCAAAAGGAAACUUUGUCACACACACCAACA------------
.....((((......................(((.(((((((...))))))).)))..(((......)))...))))..((((....))))................------------ ( -17.30)
>DroSim_CAF1 22155 102 + 1
UUUUAGUGCACUCAUACAU-----ACACCCACAGACGGAUACUUAGUAUUUUACUGCCGACACUAAAGUCCAAGCACCAAAAGGAAACUUUGUCACACACAACAACA------------
.....((((..........-----.......(((..((((((...))))))..)))..(((......)))...))))..((((....))))................------------ ( -15.10)
>DroEre_CAF1 22161 105 + 1
UUUCAGUGCACUCUUGCAC-----ACACCCACAGACAGAUACUUAGUAUUUUACUGCCGACACUAAAGUCCAAGCACCAAACAGAAACUUUGUCACACACACCAGCAGUC---------
.....(((((....)))))-----.........((((((.....((((...))))((.(((......)))...)).............))))))................--------- ( -15.30)
>DroYak_CAF1 23195 114 + 1
UAUCAGUGCACUCUUGCAC-----ACACCCACAUACAGAUACUUAGUAUUUUACUGCCGACACUAAAGUCCAAGCACCAAAAGGAAACUUUGUCACACACACCAACAGUCAAACAGUCC
.....(((((....)))))-----............((((((...)))))).((((..(((......((....))....((((....))))................)))...)))).. ( -16.00)
>consensus
UUUUAGUGCACUCAUACAU_____ACACCCACAGACGGAUACUUAGUAUUUUACUGCCGACACUAAAGUCCAAGCACCAAAAGGAAACUUUGUCACACACACCAACA____________
.....((((......................(((..((((((...))))))..)))..(((......)))...))))..((((....))))............................ (-12.68 = -13.04 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:19 2006