Locus 6927

Sequence ID 3L_DroMel_CAF1
Location 18,690,367 – 18,690,478
Length 111
Max. P 0.846238
window11232

overview

Window 2

Location 18,690,367 – 18,690,478
Length 111
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 69.67
Mean single sequence MFE -36.70
Consensus MFE -9.59
Energy contribution -13.03
Covariance contribution 3.44
Combinations/Pair 1.21
Mean z-score -1.99
Structure conservation index 0.26
SVM decision value 0.77
SVM RNA-class probability 0.846238
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18690367 111 - 23771897
UCCGCUCCAUGGGCAUUUAAUUAGUGUCACUUCUUCC----UUCGGGCUUCUUCCGAUUGCUCUGGUUUGAUGGCUGUGG----AGUGGUGGAAAGGGUGGAGGGGGUGGGGGGGGGUG
(((.((((((.((((((.....)))))).((((((((----....)(((..((((.((..((((((((....))))..))----))..))))))..)))))))))))))))).)))... ( -44.70)
>DroAna_CAF1 17629 103 - 1
UCCGCUCCAUGGGCAUUUAAUUAGUGUCACUUCU-CCUCGCUUCAGCCAACUUCCGAUUGCUUUAGUUUGAUGGCCAAGGUGUAAGCAG-GG--------------CUAUGGGGGGGUU
.((.(((((((((((((.....)))))......(-(((.((((..(((.....(((...((....))....)))....)))..))))))-))--------------)))))))).)).. ( -29.70)
>DroSim_CAF1 19729 88 - 1
UCCGCUCCAUGGGCAUUUAAUUAGUGUCACUUCU-CC----UUCGGGCUUCUUCCGAUUGCUCUGGUUUGAUGGCUGUGG----AGCGGUGGAAGG----------------------G
.(((((((((((.((((.((((((.((.......-..----.(((((.....)))))..)).)))))).)))).))))))----))))).......----------------------. ( -34.30)
>DroEre_CAF1 19658 102 - 1
UCCGCUCCAUGGGCAUUUAAUUAGUGUCACUUCU-CC----UUGGGGCUUCUUCCGAUUGCUCUGGCUGGUGGGCUGUGG----AGGGG-GGAAGG-------GGAGUAGGGGAGCAGG
...(((((...((((((.....)))))).(((((-((----((....(((((((((...((((........))))..)))----)))))-)...))-------)))).))))))))... ( -42.60)
>DroYak_CAF1 20379 93 - 1
UCCGCUCCAUGGGCAUUUAAUUAGUGUCACUUCU-CC----UUGGGGCUUCUUUCGAUGGCUUGGGUUGUUGG-------------UGG-CGAGGG-------GGGGAAGUGGAAAAGG
((((((((...((((((.....))))))...(((-((----((...(((....((((..((....))..))))-------------.))-))))))-------)))).))))))..... ( -32.20)
>consensus
UCCGCUCCAUGGGCAUUUAAUUAGUGUCACUUCU_CC____UUCGGGCUUCUUCCGAUUGCUCUGGUUUGAUGGCUGUGG____AGCGG_GGAAGG_______GG_GUAGGGGAGGAGG
.(((((((((((.((((.((((((.((...............(((((.....)))))..)).)))))).)))).))))))....))))).............................. ( -9.59 = -13.03 +   3.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:17 2006