Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,690,154 – 18,690,263 |
Length | 109 |
Max. P | 0.594179 |
Location | 18,690,154 – 18,690,263 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.64 |
Mean single sequence MFE | -17.85 |
Consensus MFE | -10.21 |
Energy contribution | -9.93 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.29 |
Mean z-score | -1.90 |
Structure conservation index | 0.57 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18690154 109 - 23771897 AACUUUUUAUAUUUCCUUGGCGUUGGCAAAAAUUUUAUUUGCCAAUUUGCUCUGCUCUUGAUUCUGUACUUCAGUGCUA----C----CCCAACCCCACCCCCCUCACA---UUUGUCAU .................(((((((((((((.......)))))))))...........(((.....((((....))))..----.----..)))................---...)))). ( -15.90) >DroSec_CAF1 19492 108 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUUCUCUGCUCUUGAUUCUGUACUUCAGUGCUC----C----CCCAACCCCACCA-CCUCACA---UUUGUCAU .................((((..(((((((.......))))))).............(((.....((((....))))..----.----..)))........-.......---...)))). ( -14.10) >DroAna_CAF1 17398 112 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGUAAAAAUUUUAUUUGCCAAUUUGUUUUGCUCUUGAUG----GCUGCGAUGCCUGGGAU-A--CCAGGCCAUGCCC-UCUUACAGAACUUGACUU ................((((((..(((((.....)))))))))))...((((((.....((.(----((((....((((((...-.--)))))))).))).-))...))))))....... ( -27.90) >DroSim_CAF1 19511 108 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUCUGCUCUUGAUUCUGUACUUCAGUGCUC----C----CCCGACCCCACCA-CCUCACA---UUUGUCAU .................(((((((((((((.......)))))))....))...............((((....))))..----.----.............-.......---...)))). ( -14.40) >DroEre_CAF1 19454 101 - 1 AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUGUGCUCUUGAUUCUGCACUUCAAUGCUC----C----CCCAUCCCAUC--------CA---UUCGCCCU ..................((((.(((((((.......)))))))..(((..((((..........))))..))).....----.----...........--------..---..)))).. ( -19.50) >DroYak_CAF1 20163 112 - 1 AACUUUUUAUAUUUCCUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUCCGCUCUUGAUUCUGUACUUCAAUCCCC----AUCCCUACAUCCCCGCCA-CCUCACA---UUUGUCAU .................(((((.(((((((.......))))))).............((((.........)))).....----.............)))))-.......---........ ( -15.30) >consensus AACUUUUUAUAUUUCUUUGGCGCUGGCAAAAAUUUUAUUUGCCAAUUUGCUCUGCUCUUGAUUCUGUACUUCAAUGCUC____C____CCCAACCCCACCA_CCUCACA___UUUGUCAU ..................((((.(((((((.......))))))).........((..((((.........)))).)).....................................)))).. (-10.21 = -9.93 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:16 2006