Locus 6922

Sequence ID 3L_DroMel_CAF1
Location 18,672,780 – 18,672,900
Length 120
Max. P 0.848021
window11221

overview

Window 1

Location 18,672,780 – 18,672,900
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.39
Mean single sequence MFE -25.84
Consensus MFE -22.23
Energy contribution -22.37
Covariance contribution 0.14
Combinations/Pair 1.08
Mean z-score -1.83
Structure conservation index 0.86
SVM decision value 0.78
SVM RNA-class probability 0.848021
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18672780 120 + 23771897
GGCUGUAAAUUAAAUUGGAAAAUAUUAAACAAACAUUUGCACUUAAUAAAAGCAAAUUGCGUUUGUUUGUGCGCAAGUAAAUAGCGAGUAUAAAGUCGCCAGUAAACAGACUCCUGUCUG
.((((....................(((((((((((((((...........))))))...)))))))))(((....)))....((((.(....).))))))))...(((((....))))) ( -28.00)
>DroSec_CAF1 10022 120 + 1
GGCUGUAAAUUAAAUUGGAAAAUAUUAAACAAACAUUUGCACUCAAUAAAAGCAAAUUGCGUUUGUUUGUACGCAAGUAAACAGCGAGUAUAAAGUCGCCAGUAAACAGACUCCUGUCUG
.((((..........((........(((((((((((((((...........))))))...)))))))))(((....)))..))((((.(....).))))))))...(((((....))))) ( -28.20)
>DroAna_CAF1 9233 120 + 1
GGCUGUAAAUUAAAUUGCGAAAUAUUAAACAAAUAUUUUCACUCAAUAAAAGCAAAUUACGUUUGUUUGUGCCCCAGUAAAUGCCGAACAUAAAGUCGCCAGUAAACAGACUCCUGUCAG
(((...........((((((((((((.....))))))))............))))...((...((((((.((..........))))))))....)).)))........(((....))).. ( -17.50)
>DroSim_CAF1 10003 120 + 1
GGCUGUAAAUUAAAUUGGAAAAUAUUAAACAAACAUUUGCACUCAAUAAAAGCAAAUUGCGUUUGUUUGUACGCAAGUAAACAGCGAGUAUAAAGUCGCCAGUAAACAGACUCCUGUCUG
.((((..........((........(((((((((((((((...........))))))...)))))))))(((....)))..))((((.(....).))))))))...(((((....))))) ( -28.20)
>DroEre_CAF1 9803 119 + 1
GGCUGUAAAUUAAAUUGGAAAAUAUUAAACAAACAUUUGCACUCAAUAAAAGCAAAUUGCGUUUGUUUGUGCGCAAGUAAACACC-AGUACAAAGUCGCCAGUAAACAGACUCCUGUCGG
(((..........(((((.......(((((((((((((((...........))))))...)))))))))(((....)))....))-)))........)))........(((....))).. ( -25.47)
>DroYak_CAF1 10247 119 + 1
GGCUGUAAAUUAAAUUGGAAAAUAUUAAACAAACAUUUGCACUCAAUAAAAGCAAAUUGCGUUUGUUUGUGCGCAAGUAAACAGC-AGUAUAAAGUCGCCAGUAAACAGACUCCUGUCUG
.(((((...................(((((((((((((((...........))))))...)))))))))(((....))).)))))-....................(((((....))))) ( -27.70)
>consensus
GGCUGUAAAUUAAAUUGGAAAAUAUUAAACAAACAUUUGCACUCAAUAAAAGCAAAUUGCGUUUGUUUGUGCGCAAGUAAACAGCGAGUAUAAAGUCGCCAGUAAACAGACUCCUGUCUG
(((......................(((((((((((((((...........))))))...)))))))))(((....)))..................)))......(((((....))))) (-22.23 = -22.37 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:06 2006