| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,671,825 – 18,671,934 |
| Length | 109 |
| Max. P | 0.777759 |
| Location | 18,671,825 – 18,671,934 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.63 |
| Mean single sequence MFE | -34.90 |
| Consensus MFE | -22.91 |
| Energy contribution | -24.72 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18671825 109 + 23771897 GCCUUGGGAGCAGGAUCAAG------AGCUGGAGGAGCAGCAAUAUAGUACUGUAUAG-----UGUAUAGCGGCUGAAGCAGCUGCGGUUGAAUCGGCUUAGCAACUUGUUCGCUGGCUU (((..(.(((((((.....(------((((((.....((((......((((.......-----.)))).(((((((...))))))).))))..))))))).....))))))).).))).. ( -38.80) >DroSec_CAF1 9065 108 + 1 GCCUUGGCAGCAGGAUCAAG------AGCUGGAGGAGCAGCAAUAUAGUACUGUAUAG-----UGUAUAGCGGCUGAAGCAGCUGCGGUUGAAUCGGCUUAGCAACUUGUUCGCUGGC-U (((..(((((((((.....(------((((((.....((((......((((.......-----.)))).(((((((...))))))).))))..))))))).....)))))).))))))-. ( -36.40) >DroAna_CAF1 8495 104 + 1 ACCU-----GCAGGAUCAAGGAUACCAGCAGAACCAGCAGUUAUACCAUA-----UACAUACACAUAGAAGAGCUAAA---GCUGCGGUGGAAUGAGCUUAACAACUCGCU--GCGGA-U ..((-----((.(((((...))).)).))))..((.(((((.........-----......(((...(...(((....---))).).)))....(((........))))))--)))).-. ( -23.10) >DroSim_CAF1 9038 108 + 1 GCCUUGGGAGCAGGAUCAAG------AGCUGGAGGAGCAGCAAUAUAGUACUGUUUAG-----UGUAUAGCGGCUGAAGCAGCUGCGGUUGAAUCGGCUUAGCAACUUGUUCGCUGGC-U (((..(.(((((((.....(------((((((.....((((......((((.......-----.)))).(((((((...))))))).))))..))))))).....))))))).).)))-. ( -38.80) >DroYak_CAF1 9274 103 + 1 GCCUUGGGAGCAGGAUCAAG------AGCUGGAGCAGCAGCAAUAUAGUA-----UAC-----AGUAUAGCGGCUAAAGCAGCUGCGGUUGAAUCGGCUUAGCAACUUGUUCGCUGGC-U (((..(.(((((((.....(------((((((..((((....((((.(..-----..)-----.)))).((((((.....)))))).))))..))))))).....))))))).).)))-. ( -37.40) >consensus GCCUUGGGAGCAGGAUCAAG______AGCUGGAGGAGCAGCAAUAUAGUACUGU_UAG_____UGUAUAGCGGCUGAAGCAGCUGCGGUUGAAUCGGCUUAGCAACUUGUUCGCUGGC_U (((..(.(((((((.............((((......))))............................((((((((..((((....))))..))))))..))..))))))).).))).. (-22.91 = -24.72 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:05 2006