Locus 692

Sequence ID 3L_DroMel_CAF1
Location 2,080,752 – 2,080,872
Length 120
Max. P 0.600185
window1059

overview

Window 9

Location 2,080,752 – 2,080,872
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.56
Mean single sequence MFE -38.99
Consensus MFE -24.44
Energy contribution -24.87
Covariance contribution 0.42
Combinations/Pair 1.39
Mean z-score -1.60
Structure conservation index 0.63
SVM decision value 0.13
SVM RNA-class probability 0.600185
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2080752 120 - 23771897
CCGGCACCUACACUUGCCGCGCCACCAACAAGCAUGGAACUGCUGAAAUAAGCUGCAAUCUGGAGUGCGUGGACAAGCCGAGGGGCCAGAAGCCGCGCUUCACGUCCCACAUUCAGCCGC
.((((.......(((((((((((.(((....(((.......(((......))))))....))).).)))))).))))....(((((..(((((...)))))..))))).......)))). ( -42.61)
>DroVir_CAF1 158494 120 - 1
CUGGCACCUACACCUGCCGUGCCACUAACAAAUAUGGUUCGGCUGAGAUAAGCUGCACUUUGGAGUGUGUAGAGAAGCCACGUGGUCAGAAGCCACACUUCACAUCGCAUAUUCAACCGC
.((((((...........))))))...........(((((((((......))))).......((((((((.((((((....(((((.....))))).))))...)))))))))))))).. ( -32.60)
>DroGri_CAF1 133091 120 - 1
CUGGCACCUACACCUGCCGGGCAACCAAUAAAUAUGGCUCGGCUGAGAUCAGCUGUACGCUGGAGUGUGUGGACAAGCCACGUGGCCAGAAGCCCCACUUCACAUCGCACAUUCAGCCAU
..((((........))))((....)).......((((((((((((....)))))).......((((((((((....(((....)))..((((.....))))...)))))))))))))))) ( -45.60)
>DroWil_CAF1 177272 120 - 1
CCGGCACCUAUACCUGCCGCGCAACCAACAAGUACGGAACAGCUGAAAUUAGCUGCACUCUGGAGUGCGUUGAUAAGCCACGUGGACAAAAACCACGUUUCACUUCGCAUCCCCAACCGC
.(((((........)))))...............(((..((((((....))))))......((..((((.(((......((((((.......)))))).)))...))))..))...))). ( -32.80)
>DroMoj_CAF1 136922 120 - 1
CCGGCACAUACACCUGCCGUGCCACCAACAAAUACGGCUCAGCUGAGAUCAGCUGCACGCUGGAGUGUGUCGACAAGCCUCGUGGCCAGAAACCGCACUUCACGUCGCACAUUCAGCCGC
..(((((...........)))))...........(((((((((((....)))))).......(((((((.((((..(((....)))..(((.......)))..)))))))))))))))). ( -44.50)
>DroAna_CAF1 139234 120 - 1
CCGGUACCUACACUUGCCGUGCCACAAAUAAAUACGGCACCGCCGAGACCAGCUGCACUUUGGAGUGCGUGGAUAAGCCGAGGGGCCAGAAACCACGCUUCACCUCUCACAUCCAGCCGC
.((((..........((.(((((............))))).)).((((..(((.(((((....)))))((((....(((....)))......))))))).....)))).......)))). ( -35.80)
>consensus
CCGGCACCUACACCUGCCGUGCCACCAACAAAUACGGCACAGCUGAGAUCAGCUGCACUCUGGAGUGCGUGGACAAGCCACGUGGCCAGAAACCACACUUCACAUCGCACAUUCAGCCGC
.(((((........)))))...............((((.((((((....)))))).....(((((((((.......(((....)))..((((.....))))....))))).)))))))). (-24.44 = -24.87 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:40 2006