Locus 6919

Sequence ID 3L_DroMel_CAF1
Location 18,670,206 – 18,670,306
Length 100
Max. P 0.600096
window11216

overview

Window 6

Location 18,670,206 – 18,670,306
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 85.83
Mean single sequence MFE -21.66
Consensus MFE -17.20
Energy contribution -16.92
Covariance contribution -0.28
Combinations/Pair 1.26
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.13
SVM RNA-class probability 0.600096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18670206 100 + 23771897
UAAUUUUAUUACCAAUUUACAACAAUUUGUGGAGUUACAUGACGUAAUUGCAACUGA-GGUAAUUGGUUUAUUCGUAUUGGCCCAGGCUUACUACAAUAUA
..........(((((((.((..((.....((.((((((.....)))))).))..)).-.)))))))))......(((..(((....)))...)))...... ( -18.80)
>DroSec_CAF1 7480 95 + 1
UAAUUUUAUUACCAAUUUACAACAAUUUGUGGAGUUACAUGACGUAAUUUCAACUGA-GGUAAUUGGUUUAUUCGCAUUGGUCCAGGCUUACU-----AUA
..........(((((((.((..((.....(((((((((.....)))))))))..)).-.)))))))))...........(((....)))....-----... ( -15.80)
>DroSim_CAF1 7422 95 + 1
UAAUUUUAUUAUCAAUUUACAACAAUUUGUGGAGUUACAUGACGUAAUUCCAACUGA-GGUAAUUGGGUUAUUCGCAUUGGCCCAGGCUUACU-----AUA
...........(((....((((....))))((((((((.....))))))))...)))-(((((((((((((.......))))))))..)))))-----... ( -22.50)
>DroEre_CAF1 7394 95 + 1
GCAUUUUAUUACCAAUGCACAACAAUUUGUGGAGUUGCAUAAAGUAAUUUCAGCCGA-GCUAAUUGGCUUACUCCCAUUGAGCCAGGCUUACC-----AUA
(((((........)))))...........(((((((((.....)))))))))...((-(((...(((((((.......))))))))))))...-----... ( -24.10)
>DroYak_CAF1 7531 96 + 1
GAAUUUUAUUACCAAUUUACAGCAAUUUGCGGAGUUACACGGAGUAAUUCCAACUGUUGGUAAUUGGCUUACUCGCAUUGGGCCAGGCUUACU-----AUA
........((((((((.....((.....))((((((((.....))))))))....))))))))((((((((.......)))))))).......-----... ( -27.10)
>consensus
UAAUUUUAUUACCAAUUUACAACAAUUUGUGGAGUUACAUGACGUAAUUCCAACUGA_GGUAAUUGGCUUAUUCGCAUUGGCCCAGGCUUACU_____AUA
........(((((........((.....))((((((((.....)))))))).......)))))((((((((.......))))))))............... (-17.20 = -16.92 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:01 2006