Locus 6917

Sequence ID 3L_DroMel_CAF1
Location 18,667,406 – 18,667,499
Length 93
Max. P 0.878614
window11213

overview

Window 3

Location 18,667,406 – 18,667,499
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.31
Mean single sequence MFE -20.87
Consensus MFE -10.94
Energy contribution -11.66
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -2.45
Structure conservation index 0.52
SVM decision value 0.90
SVM RNA-class probability 0.878614
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18667406 93 - 23771897
AAUGCAAAUUGCAAUUUUUAUGUAUUUGUAUUGGCCGAAUCCUUGGGAUUUUCCC-------------AGAUUU--CUGCC---UCUUAAAUCAGUUUUUU---------UCGCUGCCCC
(((((((((.(((.......))))))))))))(((.(((..((.(((.....)))-------------))..))--).)))---........((((.....---------..)))).... ( -21.90)
>DroSec_CAF1 4674 95 - 1
AAUGCAAAUUGCAAUUUUUAUGUAUUUGUAUUGGCCGAAUCCUUGGGAUUUUCCC-------------GGAUUUCUCUGCC---UCUUAAAUCAGUUUUUU---------UCGCUGCCUC
(((((((((.(((.......))))))))))))(((.((((((..(((.....)))-------------))))))....)))---........((((.....---------..)))).... ( -21.50)
>DroAna_CAF1 4358 108 - 1
AAUGCAAAUUGCAAUUUUUGUGUAUUUGUAUUGGACAAAUCCGAAGGAUUUCCCGUUUGGUUUUGCUUUGCUUU--CUCUCUCAACUUAAGUCCCUACUUUUUU------UUG----CCG
(((((((((((((.....)))).)))))))))(((((((.(((((((.....)).))))).)))((...))...--..............))))..........------...----... ( -17.80)
>DroSim_CAF1 4601 95 - 1
AAUGCAAAUUGCAAUUUUUAUGUAUUUGUAUUGGCCGAAUCCUUGGGAUUUUCCC-------------GGAUUUCUCUGCC---UCUUAAAUCAGUUUUUU---------UCGCUGCCUC
(((((((((.(((.......))))))))))))(((.((((((..(((.....)))-------------))))))....)))---........((((.....---------..)))).... ( -21.50)
>DroEre_CAF1 4622 102 - 1
AAUGCAAAUUGCAACUUUUAUGUAUUUGUAUUGGCCGAAUCCUCGGGAUUUUCCC-------------GGAUUU--CUGCC---UCUUAAAUCAGUUUUUUUUUUUUGACUCGCUUCCCU
(((((((((.(((.......))))))))))))(((.(((..(.((((.....)))-------------))..))--).)))---.................................... ( -22.00)
>DroYak_CAF1 4817 95 - 1
AAUGCAAAUUGCAACUUUUAUGUAUUUGUAUUGGCCGAAUCCUCGGCAUUUUCCC-------------GGAUUU--CUGCC---ACUUAAAUCCGUUUUUUUU-------UCGCUUCCUU
(((((((((.(((.......)))))))))))).(((((....))))).......(-------------((((((--.....---....)))))))........-------.......... ( -20.50)
>consensus
AAUGCAAAUUGCAAUUUUUAUGUAUUUGUAUUGGCCGAAUCCUUGGGAUUUUCCC_____________GGAUUU__CUGCC___UCUUAAAUCAGUUUUUU_________UCGCUGCCCC
(((((((((.(((.......))))))))))))(((.((((((..(((.....))).............))))))....)))....................................... (-10.94 = -11.66 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:58 2006