Locus 6916

Sequence ID 3L_DroMel_CAF1
Location 18,667,201 – 18,667,291
Length 90
Max. P 0.708391
window11212

overview

Window 2

Location 18,667,201 – 18,667,291
Length 90
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 83.40
Mean single sequence MFE -24.66
Consensus MFE -15.20
Energy contribution -15.72
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.62
SVM decision value 0.37
SVM RNA-class probability 0.708391
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18667201 90 + 23771897
UGGGCAGAAAUCAAUUUCUAUUCG---------------------GACUCCGGACUUGGGAGUCAGUCCUCAGUCCAACCAACCAUGCUCC-AACUCUCAAAUGAACUCAAG
((((((((((....)))))....(---------------------((((..(((((........)))))..)))))..........)).))-)................... ( -21.60)
>DroSec_CAF1 4473 86 + 1
UGGGCAGAAAUCAAUUUCUAUUCG---------------------GACUCCGGACUUGGGAG----UCCUCAGUCCAACCAACCAUGCUCC-AACUCUCAAAUGAACUCAAG
((((((((((....)))))....(---------------------((((..(((((....))----)))..)))))..........)).))-)................... ( -22.00)
>DroSim_CAF1 4400 86 + 1
UGGGCAGAAAUCAAUUUCUAUUCG---------------------GACUCCGGACUUGGGAG----UCCUCAGUCCAACCAACCAUGCUCC-AACUCUCAAAUGAACUCAAG
((((((((((....)))))....(---------------------((((..(((((....))----)))..)))))..........)).))-)................... ( -22.00)
>DroEre_CAF1 4422 85 + 1
UG-GCAGAAAUCAAUUUCUCUGCG---------------------GACUCCGCACUUGGGAG----UCCGCAGUCCAACCAACUGUGCCCC-AACUCCCAAAUGAACUCAAG
.(-(((((((....)))).(((((---------------------((((((.......))))----)))))))............))))..-.................... ( -27.90)
>DroYak_CAF1 4594 108 + 1
UGGGCAGAAAUCAAUUUCUCUUCGGACUGUGGACUGCGGACUUCGGACUACGGACUUGGGAG----UCCUCAAUCCAACCAACUGUGCCUCGAACUCUCAAAUGAACUCAAG
.(((((((((....)))).....(((.((.(((((.(.((.((((.....)))).)).).))----))).)).))).........))))).((..((......))..))... ( -29.80)
>consensus
UGGGCAGAAAUCAAUUUCUAUUCG_____________________GACUCCGGACUUGGGAG____UCCUCAGUCCAACCAACCAUGCUCC_AACUCUCAAAUGAACUCAAG
.(((((((((....)))).................................(((((.((((.....)))).))))).........)))))...................... (-15.20 = -15.72 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:57 2006