| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,656,329 – 18,656,439 |
| Length | 110 |
| Max. P | 0.881253 |
| Location | 18,656,329 – 18,656,439 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 69.87 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -9.21 |
| Energy contribution | -10.72 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18656329 110 - 23771897 CAAAAACAAACCACAAUCC---CAAAAAAGUAAUGAAAAAACAUGGCGAAAGAUUGAUAGUACCGGCGAGCCAAGUUGGCCCUUGGUCCGAAU-AAGGCCAA--CAUUUUUU-GCCU ...................---......................((((((((((..........((....))..(((((((.(((.......)-))))))))--))))))))-))). ( -25.10) >DroSim_CAF1 17994 100 - 1 ---AAACAAAC-------C---CAAAAAAGUAAUGAAAAAACAUGGCGAAAGAUUGAUAGUACCGGCGAGCCAAGUUGGCCCUUGGUCCGAAU-AAGGCCAA--CAUUUUUU-GCCU ---........-------.---......................((((((((((..........((....))..(((((((.(((.......)-))))))))--))))))))-))). ( -25.10) >DroEre_CAF1 17864 103 - 1 CAAAAACUAUC-------C---AAAAAAAGUAAUGAAAAAACAUGGCGAAAGAUUGAUAGUGCCGACGAGCCAAGUUGGCCCUUGGUCCGAAU-AGGGCCAA--CAUUUUUU-GCCU ...........-------.---......................((((((((((.(...(.((((((.......)))))).)(((((((....-.)))))))--))))))))-))). ( -29.80) >DroYak_CAF1 18389 100 - 1 ------CUACA-------AAAAAAAAAAUGUAAUGAAAAAACAUGGCGAAAGAUUGAUAGCACCGGCGAGCCAAGUUGGCCCUUGGUCCGAAU-AAGGCCAA--CAUUUUUU-GCCU ------.....-------..........................((((((((((..........((....))..(((((((.(((.......)-))))))))--))))))))-))). ( -25.10) >DroAna_CAF1 18906 88 - 1 ------------------------AAAAAAUAAUGCA-AAAUAUGGUGGAAGAUUGAUAGUGUGGACGAGCCAAACUAUCUCUGAG--AGAAUCCAGGCCAA--CCUUUUUUAGCCU ------------------------..........(((-(((...(((((......((((((.(((.....))).))))))((((.(--.....))))))).)--))..)))).)).. ( -18.90) >DroPer_CAF1 18007 88 - 1 ---------------------------AAAAAAAGAAAAAACCCAGGAAAAGAUUGAUAGUGCCCGGAAACCAAGUUGGCCCUCGCCCUGGCU-CGGGUCGAGUCAUGUCGG-UCCU ---------------------------.................((((...(((((((.......(....)....(((((((..((....)).-.))))))))))).)))..-)))) ( -23.20) >consensus ______C_A_C_______C____AAAAAAGUAAUGAAAAAACAUGGCGAAAGAUUGAUAGUACCGGCGAGCCAAGUUGGCCCUUGGUCCGAAU_AAGGCCAA__CAUUUUUU_GCCU ............................................(((.(((((.((.............(((.....)))..((((((........))))))..)).))))).))). ( -9.21 = -10.72 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:52 2006