| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,655,665 – 18,655,772 |
| Length | 107 |
| Max. P | 0.515703 |
| Location | 18,655,665 – 18,655,772 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 88.55 |
| Mean single sequence MFE | -40.66 |
| Consensus MFE | -31.33 |
| Energy contribution | -30.94 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18655665 107 + 23771897 CAUAGAGCCACGGGGCUUGAGCCCUUGUCUGGGCAUUUUCGGAAUAUCCGGAAUUCUGCGGG------CCCUGGGUAGUAGUUGUAGUU-UUUCGAGCUGCGGAUAUCCUGAUC ..(((.(((.(((((((((.((((......))))..((((((.....)))))).....))))------)))))))).(((.((((((((-(...))))))))).))).)))... ( -41.80) >DroSec_CAF1 17295 109 + 1 CAUAGAGCCUCGGGGUUUGAGCGCUUGUCUGGGCAUUUUCGGAAUAUCCGGAAUUCUGCGGGCUCUUGCCCUGGGUAGUAG----GGUU-UUUCGAGCUGCGGAUAUCCUGAUC ......(((.((((((..((((((((....))))..((((((.....))))))........))))..)))))))))..(((----(((.-.((((.....)))).))))))... ( -40.40) >DroSim_CAF1 17346 110 + 1 CAUAGAGCCUCGGGGCUUGAGCGCUUGUCUGGGCAUUUUCGGAAUAUCCGGAAUUCUGCGGGCUCUUGCCCUGGGAAGUAG----GGUUGUUUCGAGCUGCGGAUAUCCUGAUC ........((((((((..((((((((....))))..((((((.....))))))........))))..))))))))...(((----(((...((((.....)))).))))))... ( -41.20) >DroEre_CAF1 17170 108 + 1 CAUGGAGCCGCAAGGCUCGAGCGCUUGUCUGGGCAUUUUCGGAAUAUCCGGAAUUCUGCGGGCUGUUGCCCUGGGUAGUAG----G-UC-UUUUGAGCUGCGGACAUCCUGAUC ((.(((.(((((..(((((((.(((((.(((.(((.((((((.....))))))...)))((((....))))....))))))----)-).-.))))))))))))...)))))... ( -42.90) >DroYak_CAF1 17643 108 + 1 CACGGAGCCAUGGGGUUUGAGCGCUUGUCUGGGCAUUUUCGGAAUAUCCGGAAUUCUGCGGGCUCUUGCCCGGGGUAGUAG----G-UU-UUCUGAGCUGCGGAUAUCCUGAUC ....(((((....)))))..((.(......).))....((((.((((((......((.(((((....))))).))..((((----.-((-....)).)))))))))).)))).. ( -37.00) >consensus CAUAGAGCCACGGGGCUUGAGCGCUUGUCUGGGCAUUUUCGGAAUAUCCGGAAUUCUGCGGGCUCUUGCCCUGGGUAGUAG____GGUU_UUUCGAGCUGCGGAUAUCCUGAUC ....(((((....)))))..(((((((.....(((.((((((.....))))))...)))((((....))))......................))))).))((....))..... (-31.33 = -30.94 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:51 2006