| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,654,466 – 18,654,570 |
| Length | 104 |
| Max. P | 0.795550 |
| Location | 18,654,466 – 18,654,570 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.93 |
| Mean single sequence MFE | -22.76 |
| Consensus MFE | -14.96 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18654466 104 + 23771897 CCUUAUCCUUGAUUCACUCCCCCG-CCUCCCUGUCA---------GUCAUCAAUCGGGCCCUCUAUCCGAUGACAUGGCUUGCCGGCGGCCACGCCCCCUGGUUAACCAUAAAC .....................(((-((..(..((((---------((((....(((((.......))))))))).))))..)..)))))..........(((....)))..... ( -23.60) >DroSec_CAF1 16084 104 + 1 UCUUAUCCUUGAUCCACUCCCCCG-CCACCCCGUCA---------GUCAUCAAUCGGGCCCUCUAUCCGAUGACAUGGCUUGCCGGCGGCCACGCCCCCUGGUUAACCAUAAAC ..((((..((((.(((........-.......((.(---------(((((..((((((.......))))))...)))))).)).((((....))))...)))))))..)))).. ( -24.20) >DroSim_CAF1 16137 104 + 1 CCUUAUCCUUGAUCCACUCCCCCG-CCACCCCGUCA---------GUCAUCAAUCGGGCCCUCUAUCCGAUGACAUGGCUUGCCGGCGGCCACGCCCCCUGGUUAACCAUAAAC ..((((..((((.(((........-.......((.(---------(((((..((((((.......))))))...)))))).)).((((....))))...)))))))..)))).. ( -24.20) >DroEre_CAF1 16054 104 + 1 CUUUAUACUUGAUCCACUCC----------CCGCCAUCAAUCGGGCUCAUCAAUCGGCCUCCCUAUCUGAUGACAUGGCUUGCCGGCGGCCACGCCCCCUGGUUAACCAUAAAC .(((((..((((.(((....----------..(((((..((((((((........)))))........)))...))))).....((((....))))...)))))))..))))). ( -23.80) >DroYak_CAF1 16381 114 + 1 CUUUAUCCUUGAUCCACUCCCCCAUCCACCCCGCCAUCAAUCGGGCUCAUCAAACGGGCUCUCUAUCCGAUGACAUGGUUCGCCGGCGGCCACGCCCCCUGGUUAACCAUAAAC ..(((((.(((((......................)))))..((((((.......)))))).......))))).((((((.(((((.(((...))).)).))).)))))).... ( -26.25) >DroAna_CAF1 17294 84 + 1 -------------------CCCCU-U-CCUCAGUCA---------GUCAUCAAUCGGGAUUUCCAUUCGAUGACAUCCUCAGCCCCCAGCCACGCCCUCAGGCUAACCAUAAAC -------------------.....-.-.........---------((((((.....((....))....)))))).............((((.........)))).......... ( -14.50) >consensus CCUUAUCCUUGAUCCACUCCCCCG_CCACCCCGUCA_________GUCAUCAAUCGGGCCCUCUAUCCGAUGACAUGGCUUGCCGGCGGCCACGCCCCCUGGUUAACCAUAAAC .............................................((((((....((.....))....))))))((((...(((((.(((...))).)).)))...)))).... (-14.96 = -15.85 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:50 2006