Locus 691

Sequence ID 3L_DroMel_CAF1
Location 2,073,443 – 2,073,540
Length 97
Max. P 0.989567
window1058

overview

Window 8

Location 2,073,443 – 2,073,540
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.43
Mean single sequence MFE -18.34
Consensus MFE -16.72
Energy contribution -17.12
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.91
SVM decision value 2.17
SVM RNA-class probability 0.989567
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2073443 97 - 23771897
GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUUCGAACGUGCGCAAAAACUAGCA
((.(((..(((((.....((((((.....))))))...............................(((.......)))...)))))...))).)). ( -18.60)
>DroSec_CAF1 130175 97 - 1
GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUUCGAACGUGCGCAAAAACUAGCA
((.(((..(((((.....((((((.....))))))...............................(((.......)))...)))))...))).)). ( -18.60)
>DroSim_CAF1 133317 97 - 1
GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUGCGAACGUGCGCAAAAACUAGCA
((.(((..(((((.....((((((.....)))))).......................................((....)))))))...))).)). ( -19.40)
>DroEre_CAF1 134266 97 - 1
GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUCCGUUUUCCAUUUCCCCCUGUGAACGUGCGCAAAAACUAGCA
((.(((..(((((.....((((((.....)))))).....................(((((..((........)).))))).)))))...))).)). ( -22.10)
>DroYak_CAF1 128058 94 - 1
GCCAGU---UCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUCCAUUUCCCAUUUCCCCCUGUGAACGUGCGCAAAAACUAGCA
((.(((---((((.....((((((.....))))))............................(((........))).....)))....)))).)). ( -13.00)
>consensus
GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUGCGAACGUGCGCAAAAACUAGCA
((.(((..(((((.....((((((.....))))))...............................(((.......)))...)))))...))).)). (-16.72 = -17.12 +   0.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:39 2006