Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,073,443 – 2,073,540 |
Length | 97 |
Max. P | 0.989567 |
Location | 2,073,443 – 2,073,540 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.43 |
Mean single sequence MFE | -18.34 |
Consensus MFE | -16.72 |
Energy contribution | -17.12 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.91 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2073443 97 - 23771897 GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUUCGAACGUGCGCAAAAACUAGCA ((.(((..(((((.....((((((.....))))))...............................(((.......)))...)))))...))).)). ( -18.60) >DroSec_CAF1 130175 97 - 1 GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUUCGAACGUGCGCAAAAACUAGCA ((.(((..(((((.....((((((.....))))))...............................(((.......)))...)))))...))).)). ( -18.60) >DroSim_CAF1 133317 97 - 1 GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUGCGAACGUGCGCAAAAACUAGCA ((.(((..(((((.....((((((.....)))))).......................................((....)))))))...))).)). ( -19.40) >DroEre_CAF1 134266 97 - 1 GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUCCGUUUUCCAUUUCCCCCUGUGAACGUGCGCAAAAACUAGCA ((.(((..(((((.....((((((.....)))))).....................(((((..((........)).))))).)))))...))).)). ( -22.10) >DroYak_CAF1 128058 94 - 1 GCCAGU---UCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUCCAUUUCCCAUUUCCCCCUGUGAACGUGCGCAAAAACUAGCA ((.(((---((((.....((((((.....))))))............................(((........))).....)))....)))).)). ( -13.00) >consensus GCCAGUGGUGCGCUAUCUUGUAUCUGCCAGAUACACAUUUCCCAUAUUCUAUUUUUCAUCUUCAAUUUCCCCCUGCGAACGUGCGCAAAAACUAGCA ((.(((..(((((.....((((((.....))))))...............................(((.......)))...)))))...))).)). (-16.72 = -17.12 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:39 2006