| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,645,485 – 18,645,577 |
| Length | 92 |
| Max. P | 0.741418 |
| Location | 18,645,485 – 18,645,577 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 68.42 |
| Mean single sequence MFE | -18.24 |
| Consensus MFE | -6.15 |
| Energy contribution | -5.98 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18645485 92 - 23771897 -----AUCAAAACCAUGUAGUGAUUA-----C-------CAGCUAUAAAAACUAAAU----AUCCACUCACUUGGAAACAACCAAUCGCCUUUGGGCAUUUUAGCUCUAAUCU -----................(((((-----.-------.(((((............----.((((......))))...........(((....)))....))))).))))). ( -15.60) >DroSec_CAF1 7069 92 - 1 -----AUCAAAAAAAUGUAACGAUUU-----C-------CAGCUAUAAAAACUAAGU----AUCCACUCACUUGGAAAUAACCAAUCGCCCUUGGGCAUUUUAGCUCUGAUCU -----................((((.-----.-------.(((((......((((((----........))))))............(((....)))....)))))..)))). ( -18.50) >DroSim_CAF1 7074 92 - 1 -----AUCAAAAACAUGUUACGAUUU-----C-------CAGCUAUAAAAACUAAGU----AUCCACUCACUUGGAAAUAACCAAUCACCCUUGGGCAUUUUAGCUCUGAUCU -----................((((.-----.-------.(((((......((((((----........))))))((((..((((......))))..)))))))))..)))). ( -16.50) >DroEre_CAF1 7008 92 - 1 -----AGAGUUAUAAUGUAGGGAUUU-----C-------UA----CCAAAACUAAAAACUCCUUUACUUACUUGGAAAUAACCAAUCGCCCUUAGGCAUUUUAGCUCUGAUCU -----(((((((.(((((((((....-----.-------..----.......((((......)))).....((((......))))...))))...))))).)))))))..... ( -18.00) >DroYak_CAF1 7499 100 - 1 AAAAAGCAGUCAUCAUGUAGGGAUUU-----C-------UAACUAUCAAAAC-AUAAACUCAUUUACUUACUGGGGAAUAACCAAUCACCCGUAGGCAUUUUAGCUCUGAUCU ....(((.......((((...(((..-----.-------.....)))...))-))...........(((((.(((((........)).)))))))).......)))....... ( -14.60) >DroPer_CAF1 6589 99 - 1 -----AAAGUG--AGCGAUGCGAUUUGUGUUCCAUGUCUCAUCUGUCUCAUCUG-------AUCCACUUACAUGGAAAUAGCCAAUUGCCUUUGGGCAUUCGGGCCCUUAUCU -----......--...(((((((((.((.((((((((.......(((......)-------))......))))))))...)).))))))....((((......))))..))). ( -26.22) >consensus _____AUAAAAAAAAUGUAGCGAUUU_____C_______CAGCUAUAAAAACUAAAU____AUCCACUCACUUGGAAAUAACCAAUCGCCCUUGGGCAUUUUAGCUCUGAUCU .....................((((.....................................((((......)))).................((((......)))).)))). ( -6.15 = -5.98 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:47 2006