Locus 6907

Sequence ID 3L_DroMel_CAF1
Location 18,635,682 – 18,635,790
Length 108
Max. P 0.657008
window11201

overview

Window 1

Location 18,635,682 – 18,635,790
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.89
Mean single sequence MFE -31.27
Consensus MFE -18.02
Energy contribution -18.06
Covariance contribution 0.04
Combinations/Pair 1.23
Mean z-score -1.95
Structure conservation index 0.58
SVM decision value 0.26
SVM RNA-class probability 0.657008
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18635682 108 - 23771897
AACAGGAACAGCUGCUCCAC--------CAGC-ACAACAGCAGCAA---CCACACCCAACCCACUUUGCUCCAAAUGUGAGGGCCGUGGAGCAAAACUAUUUCAAGCAGCCACCGCAGCA
....((((.((.((((((((--------..((-......)).....---..........(((((((((...)))).))).))...))))))))...)).))))..((.((....)).)). ( -26.40)
>DroSec_CAF1 8519 105 - 1
AACAGGAGCAGUUGCUCCAC--------CAGC-ACAACAGCAGCAG------CACCCAACCCACUUUGCUCCGAAUGUGAGGGCCGUGGAGCAAAACUACUUCAAGCAGCCACCGCAGCA
....((((.(((((((((((--------..((-......((....)------)......(((((((((...)))).))).)))).))))))))..))).))))..((.((....)).)). ( -31.30)
>DroSim_CAF1 10296 105 - 1
AACAGGAGCAGCUGCUCCAC--------CAGC-ACAACAGCAGCAG------CACCCAACCCACUUUGCUCCGAAUGUGAGGGCCGUGGAGCAAAACUACUUCAAACAGCCACCGCAGCA
....((((((((((((....--------..((-......)))))))------).............))))))...((((..(((..(((((........)))))....)))..))))... ( -31.41)
>DroEre_CAF1 8228 102 - 1
AACUGGAGCAGCUGCGCCAC--------CAGC-ACAACAGCAGCAG---CCACAUCCAACCCACUUUGCUCCCAAUGUGAGGGCCGUGGAGCAAAACUACUUCAAGCAGGUAG------U
...((((...(((((((...--------....-......)).))))---)....))))......((((((((..(((.(....))))))))))))(((((((.....))))))------) ( -28.12)
>DroAna_CAF1 7900 120 - 1
AACGGGAGCUGGCGCGCCGCACCCUGCGCAGCAACAACAGCAGCAGCCGCCGCAUCCACAACACUUCCCUCCAAAUGUGAGGGCAGUGGAGCAAAAUUACUUUAAGCAGCCGCCACCACA
...((..((.(((((((........)))).((.......((.((....)).))........((((.((((((....).))))).))))..))................)))))..))... ( -39.10)
>consensus
AACAGGAGCAGCUGCUCCAC________CAGC_ACAACAGCAGCAG___CC_CACCCAACCCACUUUGCUCCAAAUGUGAGGGCCGUGGAGCAAAACUACUUCAAGCAGCCACCGCAGCA
....((((.((.((((((((..........((.......))......................((((((.......))))))...))))))))...)).))))................. (-18.02 = -18.06 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:46 2006